SMTL ID : 5tdw.1

Set3 PHD finger in complex with histone H3K4me3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-oligomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.5, C.7, H.27, C.30, Q.62 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.7, A:H.27, A:C.30 ZN.2: 4 residues within 4Å: Chain A: C.19, C.22, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:C.45, A:C.48

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: L.44, C.45, N.46, D.49, R.51 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.45, A:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gatchalian, J. et al., Structural Insight into Recognition of Methylated Histone H3K4 by Set3. J. Mol. Biol. (2017)

Release Date

2016-10-19

Peptides

SET domain-containing protein 3: A
histone H3K4me3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SET domain-containing protein 3

histone H3K4me3

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