SMTL ID : 3tiz.1

CDK2 in complex with NSC 111848

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x 3TI: 1-{(E)-[(4-hydroxyphenyl)imino]methyl}naphthalen-2-ol(Non-covalent)

3TI.1: 14 residues within 4Å: Chain A: I.10, A.31, V.64, F.80, E.81, F.82, L.83, H.84, Q.85, D.86, K.89, L.134, A.144, D.145 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.31, A:V.64, A:F.80, A:F.82, A:D.86, A:L.134, A:A.144 Hydrogen bonds: A:L.83, A:L.83, A:K.89

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: T.182, A.183, I.186, R.274, I.275, S.276 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.182 EDO.3: 6 residues within 4Å: Chain A: N.272, K.273, R.274, I.275, S.276, A.279 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.272, A:S.276, A:S.276 EDO.4: 2 residues within 4Å: Chain A: R.22, V.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.22 EDO.5: 6 residues within 4Å: Chain A: L.83, H.84, N.136, T.137, L.298 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.84, A:T.137, A:T.137 EDO.6: 3 residues within 4Å: Chain A: T.137, E.138 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.137 EDO.7: 6 residues within 4Å: Chain A: G.98, I.99, I.104, M.196, V.197, R.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.99, A:I.99, A:R.199 EDO.8: 5 residues within 4Å: Chain A: P.100, P.102, L.103, P.292, V.293 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.103, A:V.293 Water bridges: A:V.293 EDO.9: 5 residues within 4Å: Chain A: I.63, V.64, F.80, D.145, F.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.64, A:D.145, A:F.146 Water bridges: A:L.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, M.P. et al., A Novel Approach to the Discovery of Small-Molecule Ligands of CDK2. Chembiochem (2012)

Release Date

2012-08-22

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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