SMTL ID : 9gop.1

Crystal structure of CDK2-cyclin E1 bound by compound 30

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: 2-[(2~{S})-1-[9-ethyl-6-[(2-methyl-5-methylsulfonyl-pyrazol-3-yl)amino]purin-2-yl]-4,4-bis(fluoranyl)pyrrolidin-2-yl]propan-2-ol

01.1: 17 residues within 4Å: Chain A: I.10, G.11, Y.15, V.18, A.31, F.80, E.81, F.82, L.83, H.84, Q.85, D.86, K.89, Q.131, N.132, L.134, D.145 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.10, A:Y.15, A:Y.15, A:A.31, A:F.80 Hydrogen bonds: A:L.83, A:L.83 Water bridges: A:K.89, A:D.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A. et al., Discovery of AZD8421: A Potent CDK2 Inhibitor with Selectivity Against Other CDK Family Members and the Human Kinome. J.Med.Chem. (2025)

Release Date

2025-09-10

Peptides

Cyclin-dependent kinase 2: A
G1/S-specific cyclin-E1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 2

G1/S-specific cyclin-E1

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