SMTL ID : 3udd.2 (2 other biounits)

Tankyrase-1 in complex with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.131, H.134, C.139, C.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:H.134, A:C.139, A:C.142

1 x 34M: 3-(4-methoxyphenyl)-5-({[4-(4-methoxyphenyl)-5-methyl-4H-1,2,4-triazol-3-yl]sulfanyl}methyl)-1,2,4-oxadiazole(Non-covalent)

34M.2: 18 residues within 4Å: Chain A: H.81, G.82, S.83, P.84, F.85, A.88, I.89, K.92, G.93, F.94, D.95, H.98, Y.100, I.109, Y.110, Y.121, G.124, I.125 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.85, A:F.85, A:I.89, A:D.95, A:H.98, A:Y.100, A:Y.100, A:Y.110, A:Y.121, A:I.125 Hydrogen bonds: A:D.95, A:Y.110, A:I.125 pi-Stacking: A:H.81, A:H.98

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.27, H.29, R.30, K.117, Q.120 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.30 Water bridges: A:R.27, A:R.27, A:R.30, A:R.30, A:D.31, A:Q.120 Salt bridges: A:R.27, A:H.29, A:R.30, A:K.117 SO4.4: 4 residues within 4Å: Chain A: N.72, H.73, H.74, N.75 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.72, A:H.74, A:N.75 Salt bridges: A:H.73

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: R.27, E.28, H.29, G.32, G.33, G.37, I.38, F.39 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.29, A:H.29, A:F.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shultz, M.D. et al., [1,2,4]triazol-3-ylsulfanylmethyl)-3-phenyl-[1,2,4]oxadiazoles: antagonists of the Wnt pathway that inhibit tankyrases 1 and 2 via novel adenosine pocket binding. J.Med.Chem. (2012)

Release Date

2012-02-01

Peptides

Tankyrase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tankyrase-1

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