SMTL ID : 3uh4.3 (2 other biounits)

TANKYRASE-1 complexed with NVP-XAV939

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.131, H.134, C.139, C.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:H.134, A:C.139, A:C.142 ZN.8: 4 residues within 4Å: Chain B: C.131, H.134, C.139, C.142 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.131, B:H.134, B:C.139, B:C.142

2 x XAV: 2-[4-(trifluoromethyl)phenyl]-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-4-ol(Non-covalent)

XAV.2: 14 residues within 4Å: Chain A: H.81, G.82, S.83, P.84, F.85, Y.110, F.111, A.112, S.118, Y.121, G.124, I.125, E.188 Ligands: GOL.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.121, A:Y.121, A:Y.121, A:I.125 Hydrogen bonds: A:G.82, A:G.82 Water bridges: A:Y.110 pi-Stacking: A:Y.121 XAV.9: 16 residues within 4Å: Chain B: H.81, G.82, S.83, P.84, H.98, Y.100, Y.110, F.111, A.112, K.117, S.118, Y.121, I.125, E.188 Ligands: GOL.13, GOL.14 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.100, B:Y.100, B:Y.121, B:Y.121, B:I.125 Hydrogen bonds: B:G.82, B:G.82 pi-Stacking: B:Y.121

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: H.73, H.74, N.75 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.74, A:N.75 Water bridges: A:E.76 Salt bridges: A:H.73, A:H.74 SO4.4: 5 residues within 4Å: Chain A: R.27, H.29, R.30, K.117, Q.120 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.30, A:Q.120 Water bridges: A:D.31, A:D.31 Salt bridges: A:R.27, A:H.29, A:R.30, A:K.117 SO4.5: 3 residues within 4Å: Chain A: N.40, P.210, E.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.40, A:E.211 Water bridges: A:N.40 SO4.6: 3 residues within 4Å: Chain A: R.46, H.143, T.204 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.46, A:H.143 SO4.10: 4 residues within 4Å: Chain B: R.27, H.29, R.30, K.117 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.30 Water bridges: B:R.30, B:Q.120, B:Q.120 Salt bridges: B:R.27, B:H.29, B:R.30, B:K.117 SO4.11: 3 residues within 4Å: Chain B: H.73, H.74, N.75 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.74, B:N.75 Salt bridges: B:H.73, B:H.74 SO4.12: 1 residues within 4Å: Chain B: R.150 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.150

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 8 residues within 4Å: Chain A: H.81, S.83, F.85, I.89, F.94, D.95, H.98 Ligands: XAV.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.83, A:S.83, A:D.95, A:D.95 Water bridges: A:G.93 GOL.13: 11 residues within 4Å: Chain B: H.81, S.83, I.89, F.94, D.95, H.98, A.99, Y.100, G.108, I.109 Ligands: XAV.9 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.83, B:D.95, B:D.95, B:Y.100, B:G.108 GOL.14: 3 residues within 4Å: Chain B: I.101, I.125 Ligands: XAV.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kirby, C.A. et al., Structure of human tankyrase 1 in complex with small-molecule inhibitors PJ34 and XAV939. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-02-15

Peptides

Tankyrase-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tankyrase-1

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