SMTL ID : 4li8.1 (1 other biounit)

TANKYRASE-1 complexed with small molecule inhibitor 2-[4-(4-fluorobenzoyl)piperidin-1-yl]-N-[(4-oxo-3,5,7,8-tetrahydro-4H-pyrano[4,3-d]pyrimidin-2-yl)methyl]-N-(thiophen-2-ylmethyl)acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.131, H.134, C.139, C.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:H.134, A:C.139, A:C.142

1 x 1XQ: 2-[4-(4-fluorobenzoyl)piperidin-1-yl]-N-[(4-oxo-3,5,7,8-tetrahydro-4H-pyrano[4,3-d]pyrimidin-2-yl)methyl]-N-(thiophen-2-ylmethyl)acetamide(Non-covalent)

1XQ.2: 22 residues within 4Å: Chain A: H.81, G.82, S.83, P.84, F.85, A.88, I.89, G.93, F.94, D.95, H.98, A.99, G.108, I.109, Y.110, F.111, A.112, K.117, S.118, Y.121, I.125, E.188 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.85, A:F.85, A:A.88, A:I.89, A:H.98, A:I.109, A:Y.121, A:I.125 Hydrogen bonds: A:G.82, A:G.82, A:D.95, A:Y.110 pi-Stacking: A:H.98, A:Y.121

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: H.73, H.74, N.75, E.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.74, A:N.75, A:E.76 SO4.4: 5 residues within 4Å: Chain A: R.27, H.29, R.30, K.117, Q.120 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.30, A:Q.120 Water bridges: A:D.31, A:Q.120 Salt bridges: A:R.27, A:H.29, A:R.30, A:K.117 SO4.5: 1 residues within 4Å: Chain A: H.73 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shultz, M.D. et al., Identification of NVP-TNKS656: The Use of Structure-Efficiency Relationships To Generate a Highly Potent, Selective, and Orally Active Tankyrase Inhibitor. J.Med.Chem. (2013)

Release Date

2013-08-14

Peptides

Tankyrase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tankyrase-1

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