- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- 2 x YRO: 5-(3,3-dimethylbutyl)-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
YRO.3: 14 residues within 4Å:- Chain A: K.44, N.68, S.69, M.70, G.71, L.72, N.128, S.130, C.131, P.132, N.195, S.196
- Ligands: FMN.1, GOL.6
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:L.72
- Hydrogen bonds: A:N.68, A:N.68, A:M.70, A:G.71, A:L.72, A:N.128, A:N.195, A:N.195, A:S.196
- Water bridges: A:G.220
- Salt bridges: A:K.44
YRO.8: 13 residues within 4Å:- Chain B: K.44, N.68, M.70, G.71, L.72, P.73, N.128, S.130, P.132, N.195, S.196
- Ligands: FMN.7, GOL.12
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:L.72
- Hydrogen bonds: B:N.68, B:N.68, B:N.68, B:M.70, B:G.71, B:L.72, B:N.128, B:N.195, B:N.195, B:S.196
- Salt bridges: B:K.44
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 5 residues within 4Å:- Chain A: C.32, A.35, S.36, P.280, G.281
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.280
- Water bridges: A:S.37
GOL.5: 6 residues within 4Å:- Chain A: I.172, R.239, R.240
- Chain B: K.215, Q.216, F.218
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:R.240, A:R.240
- Water bridges: B:Q.216, B:Q.216, B:Q.216
GOL.6: 8 residues within 4Å:- Chain A: S.130, Q.139, P.167, N.195, S.196, G.198, G.220
- Ligands: YRO.3
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:S.130, A:N.195, A:S.196
- Water bridges: A:Q.139, A:Q.139, A:G.198, A:N.199, A:G.220
GOL.9: 5 residues within 4Å:- Chain A: K.215, F.218
- Chain B: I.172, R.239, R.240
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Water bridges: A:Q.216, A:Q.216
- Hydrogen bonds: B:R.240, B:R.240
GOL.10: 2 residues within 4Å:- Chain B: T.177, A.180
1 PLIP interactions:1 interactions with chain B- Water bridges: B:T.177
GOL.11: 5 residues within 4Å:- Chain B: L.5, N.6, L.245, E.303, R.306
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.6, B:E.303, B:E.303, B:R.306
- Water bridges: B:R.306, B:R.306
GOL.12: 9 residues within 4Å:- Chain B: S.130, Q.139, P.167, P.168, N.195, S.196, G.198, G.220
- Ligands: YRO.8
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.130, B:S.196, B:S.196
- Water bridges: B:N.68, B:G.198, B:N.199, B:G.220
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with NL-2. To be Published
- Release Date
- 2013-11-20
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- 2 x YRO: 5-(3,3-dimethylbutyl)-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with NL-2. To be Published
- Release Date
- 2013-11-20
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B