- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 2RO: 5-[2-(4-tert-butylphenyl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: C.32, A.35, S.36, P.280, G.281
2 PLIP interactions:2 interactions with chain A- Water bridges: A:S.37, A:P.280
GOL.3: 6 residues within 4Å:- Chain A: I.172, R.239, R.240
- Chain B: K.215, Q.216, F.218
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.240, A:R.240
- Water bridges: B:Q.216, B:Q.216
GOL.4: 6 residues within 4Å:- Chain A: K.215, Q.216, F.218
- Chain B: I.172, R.239, R.240
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.240, B:R.240
- Water bridges: A:Q.216
GOL.5: 8 residues within 4Å:- Chain A: S.130, Q.139, P.167, N.195, S.196, G.198, G.220
- Ligands: 2RO.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.130
- Water bridges: A:N.68, A:G.198, A:N.199
GOL.6: 4 residues within 4Å:- Chain A: F.62, V.202, I.203, D.204
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.204
GOL.10: 8 residues within 4Å:- Chain B: S.130, Q.139, P.167, N.195, S.196, G.198, G.220
- Ligands: 2RO.9
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.130, B:S.196
- Water bridges: B:G.198, B:N.199
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.7: 24 residues within 4Å:- Chain A: A.19, A.20, G.21, K.44, S.45, Y.59, S.66, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, V.271, G.272, T.273
- Ligands: 2RO.1
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:Y.59, A:Y.59
- Hydrogen bonds: A:A.20, A:S.45, A:S.45, A:S.45, A:K.165, A:K.165, A:N.195, A:G.223, A:G.251, A:G.272, A:T.273, A:T.273
- Water bridges: A:A.20, A:S.98, A:G.250, A:G.250, A:V.252, A:A.274
FMN.11: 23 residues within 4Å:- Chain B: A.19, A.20, G.21, K.44, S.45, Y.59, S.66, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, G.272, T.273
- Ligands: 2RO.9
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:Y.59, B:Y.59
- Hydrogen bonds: B:A.20, B:S.45, B:S.45, B:S.45, B:N.128, B:K.165, B:K.165, B:N.195, B:G.223, B:G.251, B:G.272, B:T.273, B:T.273
- Water bridges: B:K.44, B:G.250, B:G.250, B:V.252, B:V.252
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-125. To be Published
- Release Date
- 2013-11-27
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 2RO: 5-[2-(4-tert-butylphenyl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-125. To be Published
- Release Date
- 2013-11-27
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B