- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.58 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W76: 5-[2-(3-methoxyphenyl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 15 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: K.215, F.218
- Chain B: I.172, R.239, R.240
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.240, B:R.240
- Water bridges: A:Q.216, A:Q.216
GOL.3: 7 residues within 4Å:- Chain A: I.172, R.239, R.240
- Chain B: K.215, Q.216, F.218
- Ligands: GOL.15
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.240, A:R.240
- Water bridges: B:Q.216
GOL.4: 7 residues within 4Å:- Chain A: S.130, P.167, N.195, S.196, G.198, G.220
- Ligands: W76.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.130, A:S.130, A:S.196, A:S.196, A:G.220
- Water bridges: A:N.68, A:G.198, A:N.199, A:K.215
GOL.5: 3 residues within 4Å:- Chain A: Y.238, R.239, P.242
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.239, A:P.242
GOL.6: 4 residues within 4Å:- Chain A: F.62, V.202, I.203, D.204
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.204, A:D.204
GOL.7: 7 residues within 4Å:- Chain A: V.11, A.13, Y.90, S.91, K.92, P.94
- Ligands: GOL.8
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.13, A:Y.90
- Water bridges: A:H.10, A:V.11, A:K.92
GOL.8: 7 residues within 4Å:- Chain A: H.10, Y.90, K.93, P.94, K.121, G.122
- Ligands: GOL.7
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.90, A:K.121, A:G.122
- Water bridges: A:H.10
GOL.9: 3 residues within 4Å:- Chain A: Y.59, M.70, Q.276
7 PLIP interactions:7 interactions with chain A- Water bridges: A:G.21, A:S.25, A:R.58, A:R.58, A:Y.59, A:Y.59, A:Q.276
GOL.10: 9 residues within 4Å:- Chain A: Y.142, Y.169, F.170, D.171, H.174
- Chain B: Y.169, F.170, D.171, H.174
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:F.170, A:D.171, A:H.174, B:F.170, B:D.171, B:H.174
GOL.13: 4 residues within 4Å:- Chain B: C.32, A.35, S.36, P.280
2 PLIP interactions:2 interactions with chain B- Water bridges: B:S.37, B:S.37
GOL.14: 4 residues within 4Å:- Chain B: L.5, N.6, E.303, R.306
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.6, B:R.306
GOL.15: 4 residues within 4Å:- Chain A: R.239, R.240
- Chain B: Q.216
- Ligands: GOL.3
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:Q.216, A:R.239
- Water bridges: A:R.239, A:R.239
GOL.16: 5 residues within 4Å:- Chain B: F.62, V.202, I.203, D.204, V.211
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.204
GOL.17: 3 residues within 4Å:- Chain B: Y.59, M.70, Q.276
5 PLIP interactions:5 interactions with chain B- Water bridges: B:G.21, B:E.56, B:R.58, B:Y.59, B:Q.276
GOL.18: 9 residues within 4Å:- Chain B: S.130, Q.139, P.167, P.168, N.195, S.196, G.198, G.220
- Ligands: W76.12
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.196
- Water bridges: B:N.68, B:G.198, B:N.199
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.11: 22 residues within 4Å:- Chain A: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, G.272, T.273
- Ligands: W76.1
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:Y.59, A:Y.59
- Hydrogen bonds: A:A.20, A:S.45, A:S.45, A:S.45, A:N.128, A:K.165, A:K.165, A:N.195, A:G.223, A:G.251, A:G.272, A:T.273, A:T.273
- Water bridges: A:A.20, A:S.98, A:G.250, A:G.250, A:V.252, A:V.252
FMN.19: 23 residues within 4Å:- Chain B: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, V.271, G.272, T.273
- Ligands: W76.12
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:Y.59, B:Y.59
- Hydrogen bonds: B:A.20, B:S.45, B:S.45, B:S.45, B:K.165, B:K.165, B:N.195, B:G.223, B:G.251, B:G.272, B:T.273, B:T.273
- Water bridges: B:A.20, B:S.98, B:G.250, B:V.252, B:V.252, B:V.252
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-4-189. To be Published
- Release Date
- 2014-03-05
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.58 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W76: 5-[2-(3-methoxyphenyl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 15 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-4-189. To be Published
- Release Date
- 2014-03-05
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B