SMTL ID : 3wmm.1

Crystal structure of the LH1-RC complex from Thermochromatium tepidum in C2 form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-1-1-1-1-16-16-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.1: 21 residues within 4Å: Chain A: Y.76, Q.77, N.78, V.79, Q.80, V.81, L.82, F.90, M.94, V.97, T.98, S.102, C.107, C.110, H.111, W.116, A.117, K.124, S.127, R.128 Ligands: HEM.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:Y.76, A:Y.76, A:Y.76, A:F.90, A:V.97, A:W.116, A:W.116, A:K.124 Hydrogen bonds: A:Q.77, A:N.78, A:Q.80, A:V.81, A:L.82 Salt bridges: A:R.128 pi-Stacking: A:H.111, A:H.111 Metal complexes: A:H.111 HEM.2: 23 residues within 4Å: Chain A: V.97, V.101, Y.109, Y.122, T.123, V.126, S.127, M.130, F.131, V.134, T.151, C.152, C.155, H.156, P.160, V.161, P.162, L.291, R.295, L.303, R.304, V.305 Ligands: HEM.1 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:V.97, A:V.101, A:V.101, A:V.126, A:M.130, A:F.131, A:V.134, A:V.161, A:P.162, A:L.303, A:V.305 Salt bridges: A:R.295, A:R.295 pi-Stacking: A:H.156, A:H.156 pi-Cation interactions: A:H.156 Metal complexes: A:H.156 HEM.3: 24 residues within 4Å: Chain A: I.210, R.211, I.212, T.213, T.232, F.233, M.236, I.239, S.240, L.243, V.245, C.247, C.250, H.251, F.256, N.257, R.266, A.269, W.270, I.273, R.274 Chain B: L.174 Chain C: I.191, Y.317 25 PLIP interactions: 22 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: A:I.210, A:T.232, A:F.233, A:M.236, A:I.239, A:L.243, A:V.245, A:F.256, A:F.256, A:F.256, A:A.269, C:I.191, B:L.174 Hydrogen bonds: A:I.210, A:R.211, A:I.212, A:T.213, A:W.270, C:Y.317 Salt bridges: A:R.274 pi-Stacking: A:H.251, A:H.251 pi-Cation interactions: A:H.251, A:R.266 Metal complexes: A:H.251 HEM.4: 22 residues within 4Å: Chain A: H.144, V.145, A.146, T.148, G.149, V.150, L.204, I.239, L.243, K.265, A.269, A.272, I.273, V.276, V.305, S.306, C.307, C.310, H.311, N.315, K.316, P.317 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:A.146, A:L.204, A:I.239, A:L.243, A:L.243, A:A.272, A:V.276, A:V.305, A:K.316 Hydrogen bonds: A:T.148, A:T.148 Salt bridges: A:K.265, A:K.316 pi-Stacking: A:H.144, A:H.144, A:H.311, A:H.311, A:H.311 pi-Cation interactions: A:H.275 Metal complexes: A:H.144, A:H.311

17 x CA: CALCIUM ION(Non-covalent)

CA.5: 3 residues within 4Å: Chain A: Q.183, E.230 Chain C: E.96 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.230, A:E.230 CA.26: 6 residues within 4Å: Chain 9: L.47 Chain E: W.46, D.49, N.50, I.51 Chain F: R.44 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain 9 Metal complexes: E:W.46, E:D.49, E:I.51, 9:L.47 CA.29: 7 residues within 4Å: Chain F: L.47 Chain G: W.46, L.47, D.49, N.50, I.51 Chain H: R.44 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain F Metal complexes: G:W.46, G:D.49, G:I.51, F:L.47 CA.32: 5 residues within 4Å: Chain H: L.47 Chain I: W.46, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain H Metal complexes: I:W.46, I:D.49, I:I.51, H:L.47 CA.36: 6 residues within 4Å: Chain J: L.47 Chain K: W.46, D.49, N.50, I.51 Chain L: R.44 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain J Metal complexes: K:W.46, K:D.49, K:I.51, J:L.47 CA.40: 6 residues within 4Å: Chain L: L.47 Chain M: W.46, D.49, N.50, I.51 Chain N: R.44 4 PLIP interactions: 3 interactions with chain M, 1 interactions with chain L Metal complexes: M:W.46, M:D.49, M:I.51, L:L.47 CA.44: 5 residues within 4Å: Chain N: L.47 Chain O: W.46, D.49, N.50, I.51 4 PLIP interactions: 1 interactions with chain N, 3 interactions with chain O Metal complexes: N:L.47, O:W.46, O:D.49, O:I.51 CA.48: 6 residues within 4Å: Chain P: L.47 Chain Q: N.45, W.46, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain P Metal complexes: Q:W.46, Q:D.49, Q:I.51, P:L.47 CA.52: 5 residues within 4Å: Chain R: L.47 Chain S: W.46, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain S, 1 interactions with chain R Metal complexes: S:W.46, S:D.49, S:I.51, R:L.47 CA.56: 6 residues within 4Å: Chain T: L.47 Chain U: W.46, D.49, N.50, I.51 Chain V: R.44 4 PLIP interactions: 3 interactions with chain U, 1 interactions with chain T Metal complexes: U:W.46, U:D.49, U:I.51, T:L.47 CA.60: 5 residues within 4Å: Chain V: L.47 Chain W: W.46, D.49, N.50, I.51 4 PLIP interactions: 1 interactions with chain V, 3 interactions with chain W Metal complexes: V:L.47, W:W.46, W:D.49, W:I.51 CA.65: 6 residues within 4Å: Chain X: L.47 Chain Y: W.46, D.49, N.50, I.51 Chain Z: R.44 4 PLIP interactions: 3 interactions with chain Y, 1 interactions with chain X Metal complexes: Y:W.46, Y:D.49, Y:I.51, X:L.47 CA.68: 5 residues within 4Å: Chain 0: W.46, D.49, N.50, I.51 Chain Z: L.47 4 PLIP interactions: 1 interactions with chain Z, 3 interactions with chain 0 Metal complexes: Z:L.47, 0:W.46, 0:D.49, 0:I.51 CA.72: 6 residues within 4Å: Chain 1: L.47 Chain 2: W.46, D.49, N.50, I.51 Chain 3: R.44 4 PLIP interactions: 3 interactions with chain 2, 1 interactions with chain 1 Metal complexes: 2:W.46, 2:D.49, 2:I.51, 1:L.47 CA.77: 5 residues within 4Å: Chain 3: L.47 Chain 4: W.46, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain 4, 1 interactions with chain 3 Metal complexes: 4:W.46, 4:D.49, 4:I.51, 3:L.47 CA.80: 7 residues within 4Å: Chain 5: W.46, L.47 Chain 6: W.46, L.47, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain 6, 1 interactions with chain 5 Metal complexes: 6:W.46, 6:D.49, 6:I.51, 5:L.47 CA.84: 5 residues within 4Å: Chain 7: L.47 Chain 8: W.46, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain 8, 1 interactions with chain 7 Metal complexes: 8:W.46, 8:D.49, 8:I.51, 7:L.47

36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.6: 26 residues within 4Å: Chain B: F.106, A.133, A.136, Y.137, L.140, W.165, V.166, S.167, V.169, G.170, Y.171, F.176, H.177, H.182, I.186, F.189, S.253, A.254, C.256, I.257 Chain C: Y.197 Ligands: BPH.7, BCL.10, BCL.11, BCL.12, MQ8.15 19 PLIP interactions: 18 interactions with chain B, 1 interactions with chain C, Hydrophobic interactions: B:F.106, B:F.106, B:F.106, B:A.136, B:L.140, B:V.169, B:Y.171, B:F.176, B:F.176, B:I.186, B:I.186, B:I.186, B:F.189, B:F.189, B:I.257 Hydrogen bonds: B:S.253, B:I.257, C:T.186 Metal complexes: B:H.182 BCL.10: 18 residues within 4Å: Chain B: V.47, F.106, Y.137, L.140, F.155, I.159, L.160, H.162 Chain C: Y.197, M.203, I.206, A.207, Y.210, G.211 Ligands: BCL.6, BPH.7, BCL.12, MQ8.15 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain C, Hydrophobic interactions: B:V.47, B:F.106, B:L.140, B:F.155, C:Y.197, C:I.206, C:Y.210 Metal complexes: B:H.162 pi-Stacking: C:Y.210 BCL.11: 18 residues within 4Å: Chain B: H.177, M.183, I.186, S.187, F.190, T.191, V.229 Chain C: F.156, L.160, V.175, I.179, H.182, L.183 Ligands: BCL.6, UQ8.8, BCL.12, BPH.13, CRT.16 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B, Hydrophobic interactions: C:F.156, C:L.160, C:V.175, C:L.183, B:I.186, B:I.186 Metal complexes: C:H.182 pi-Stacking: B:F.190 BCL.12: 29 residues within 4Å: Chain B: V.166, Y.171, H.177, F.190 Chain C: I.71, L.122, I.126, A.153, F.156, Y.157, T.186, F.189, S.190, L.196, Y.197, N.199, H.202, S.205, I.206, L.209, Y.210, A.280, G.283, I.284 Ligands: BCL.6, BCL.10, BCL.11, BPH.13, CRT.16 16 PLIP interactions: 15 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:I.71, C:L.122, C:I.126, C:F.156, C:F.156, C:F.156, C:Y.157, C:F.189, C:L.196, C:Y.197, C:I.206, C:Y.210 Hydrogen bonds: C:Y.197 pi-Stacking: C:Y.197 Metal complexes: C:H.202 pi-Cation interactions: B:H.177 BCL.24: 18 residues within 4Å: Chain 8: I.11, W.12, L.15, I.24 Chain E: Q.28, I.29, G.32, H.36, W.46 Chain F: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.23, BCL.27, CRT.28, BCL.86 8 PLIP interactions: 3 interactions with chain 8, 3 interactions with chain F, 2 interactions with chain E, Hydrophobic interactions: 8:I.11, 8:W.12, 8:I.24, F:W.29, F:W.29, F:A.36, E:Q.28 Metal complexes: E:H.36 BCL.27: 17 residues within 4Å: Chain E: Q.28, L.31, G.32, I.35, H.36, V.39, D.43 Chain F: W.29, F.30, V.33, H.37, W.41, W.46 Chain G: L.47 Ligands: BCL.24, CRT.28, BCL.30 7 PLIP interactions: 3 interactions with chain F, 1 interactions with chain G, 3 interactions with chain E, Hydrophobic interactions: F:F.30, F:V.33, G:L.47, E:V.39 Metal complexes: F:H.37 Hydrogen bonds: E:Q.28 pi-Stacking: E:H.36 BCL.30: 20 residues within 4Å: Chain E: W.12, I.24, I.35 Chain F: F.22, M.26 Chain G: L.21, V.25, Q.28, I.29, G.32, H.36, W.46, L.47 Chain H: W.29, V.33, A.36, H.37 Ligands: BCL.27, CRT.28, BCL.31 16 PLIP interactions: 7 interactions with chain G, 4 interactions with chain E, 1 interactions with chain F, 4 interactions with chain H, Hydrophobic interactions: G:L.21, G:V.25, G:Q.28, G:Q.28, G:W.46, G:W.46, E:W.12, E:I.24, E:I.24, E:I.35, F:F.22, H:W.29, H:W.29, H:W.29, H:A.36 Metal complexes: G:H.36 BCL.31: 16 residues within 4Å: Chain G: Q.28, L.31, G.32, I.35, H.36 Chain H: F.30, V.33, V.34, H.37, L.38, W.41, W.46 Chain J: L.39 Ligands: CRT.25, BCL.30, BCL.33 14 PLIP interactions: 3 interactions with chain G, 11 interactions with chain H, Hydrophobic interactions: G:L.31, G:I.35, H:F.30, H:V.33, H:V.34, H:H.37, H:W.41, H:W.46, H:W.46, H:W.46, H:W.46 Hydrogen bonds: G:Q.28 pi-Stacking: H:H.37 Metal complexes: H:H.37 BCL.33: 19 residues within 4Å: Chain G: I.11, W.12, V.20, I.24 Chain H: F.22 Chain I: L.21, V.25, Q.28, I.29, H.36, L.44, W.46 Chain J: W.29, V.33, A.36, H.37 Ligands: CRT.25, BCL.31, BCL.34 13 PLIP interactions: 9 interactions with chain I, 3 interactions with chain G, 1 interactions with chain H, Hydrophobic interactions: I:L.21, I:V.25, I:Q.28, I:I.29, I:L.44, I:W.46, I:W.46, I:W.46, G:I.11, G:V.20, G:I.24, H:F.22 Metal complexes: I:H.36 BCL.34: 14 residues within 4Å: Chain I: Q.28, L.31, G.32, I.35, H.36, L.44 Chain J: W.29, F.30, V.33, H.37, W.41, W.46 Ligands: BCL.33, BCL.37 13 PLIP interactions: 9 interactions with chain J, 4 interactions with chain I, Hydrophobic interactions: J:F.30, J:V.33, J:H.37, J:W.41, J:W.41, J:W.41, J:W.46, J:W.46, I:L.31, I:I.35, I:L.44 Metal complexes: J:H.37 Hydrogen bonds: I:Q.28 BCL.37: 20 residues within 4Å: Chain I: I.24 Chain J: F.22, L.47 Chain K: V.25, Q.28, I.29, G.32, H.36, V.39, W.46, L.47 Chain L: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.34, CRT.35, BCL.38, CRT.39 16 PLIP interactions: 9 interactions with chain K, 2 interactions with chain J, 1 interactions with chain I, 4 interactions with chain L, Hydrophobic interactions: K:V.25, K:Q.28, K:V.39, K:W.46, K:W.46, K:W.46, K:W.46, K:L.47, J:F.22, J:L.47, I:I.24, L:W.29, L:W.29, L:W.29, L:A.36 Metal complexes: K:H.36 BCL.38: 18 residues within 4Å: Chain K: Q.28, L.31, G.32, I.35, H.36, D.43, L.44 Chain L: W.29, F.30, V.33, H.37, A.40, W.41, W.46 Chain N: L.39 Ligands: BCL.37, CRT.39, BCL.41 13 PLIP interactions: 9 interactions with chain L, 1 interactions with chain N, 3 interactions with chain K, Hydrophobic interactions: L:F.30, L:V.33, L:A.40, L:W.41, L:W.46, L:W.46, L:W.46, N:L.39, K:I.35, K:L.44 pi-Stacking: L:H.37 Metal complexes: L:H.37 Hydrogen bonds: K:Q.28 BCL.41: 21 residues within 4Å: Chain K: I.11, I.24, I.35 Chain L: F.22, L.47 Chain M: V.25, Q.28, I.29, G.32, H.36, V.39, W.46, L.47 Chain N: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.38, CRT.39, BCL.42 18 PLIP interactions: 8 interactions with chain M, 4 interactions with chain K, 4 interactions with chain N, 2 interactions with chain L, Hydrophobic interactions: M:V.25, M:Q.28, M:I.29, M:V.39, M:W.46, M:W.46, M:W.46, K:I.11, K:I.24, K:I.24, K:I.35, N:W.29, N:W.29, N:W.29, N:A.36, L:F.22, L:L.47 Metal complexes: M:H.36 BCL.42: 15 residues within 4Å: Chain M: Q.28, L.31, G.32, I.35, H.36 Chain N: W.29, F.30, V.33, H.37, W.41, W.46 Chain O: L.47 Ligands: BCL.41, CRT.43, BCL.45 14 PLIP interactions: 1 interactions with chain O, 3 interactions with chain M, 10 interactions with chain N, Hydrophobic interactions: O:L.47, M:L.31, M:I.35, N:F.30, N:F.30, N:F.30, N:V.33, N:W.41, N:W.46, N:W.46, N:W.46 Hydrogen bonds: M:Q.28 pi-Stacking: N:H.37 Metal complexes: N:H.37 BCL.45: 18 residues within 4Å: Chain M: L.15, V.20, I.24 Chain N: F.22 Chain O: V.25, Q.28, I.29, H.36, W.46, L.47 Chain P: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.42, CRT.43, BCL.46 12 PLIP interactions: 4 interactions with chain O, 4 interactions with chain P, 3 interactions with chain M, 1 interactions with chain N, Hydrophobic interactions: O:Q.28, O:W.46, O:W.46, P:W.29, P:W.29, P:W.29, P:A.36, M:L.15, M:V.20, M:I.24, N:F.22 Metal complexes: O:H.36 BCL.46: 13 residues within 4Å: Chain O: Q.28, L.31, G.32, I.35, H.36 Chain P: W.29, F.30, V.33, H.37, W.46 Ligands: BCL.45, CRT.47, BCL.49 10 PLIP interactions: 8 interactions with chain P, 2 interactions with chain O, Hydrophobic interactions: P:F.30, P:F.30, P:V.33, P:W.46, P:W.46, P:W.46, P:W.46, O:I.35 Metal complexes: P:H.37 Hydrogen bonds: O:Q.28 BCL.49: 17 residues within 4Å: Chain O: I.11, V.20 Chain Q: V.25, Q.28, I.29, H.36, W.46, L.47 Chain R: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.46, CRT.47, BCL.50, CRT.51 10 PLIP interactions: 3 interactions with chain R, 1 interactions with chain O, 6 interactions with chain Q, Hydrophobic interactions: R:W.29, R:W.29, R:A.36, O:I.11, Q:Q.28, Q:W.46, Q:W.46, Q:W.46, Q:W.46 Metal complexes: Q:H.36 BCL.50: 16 residues within 4Å: Chain Q: Q.28, L.31, G.32, I.35, H.36 Chain R: W.29, F.30, V.33, H.37, W.41, W.46, L.47 Chain T: L.39 Ligands: BCL.49, CRT.51, BCL.53 13 PLIP interactions: 3 interactions with chain Q, 9 interactions with chain R, 1 interactions with chain T, Hydrophobic interactions: Q:L.31, Q:I.35, R:F.30, R:F.30, R:V.33, R:W.41, R:W.46, R:W.46, R:W.46, R:L.47, T:L.39 Hydrogen bonds: Q:Q.28 Metal complexes: R:H.37 BCL.53: 15 residues within 4Å: Chain Q: I.11, V.20 Chain S: V.25, Q.28, I.29, H.36, W.46 Chain T: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.50, CRT.51, BCL.54 10 PLIP interactions: 2 interactions with chain Q, 1 interactions with chain T, 7 interactions with chain S, Hydrophobic interactions: Q:I.11, Q:V.20, T:W.29, S:V.25, S:Q.28, S:W.46, S:W.46, S:W.46, S:W.46 Metal complexes: S:H.36 BCL.54: 16 residues within 4Å: Chain S: Q.28, L.31, G.32, I.35, H.36, L.44 Chain T: W.29, F.30, V.33, H.37, W.41, W.46 Chain U: L.47 Ligands: BCL.53, CRT.55, BCL.57 9 PLIP interactions: 6 interactions with chain T, 2 interactions with chain S, 1 interactions with chain U, Hydrophobic interactions: T:F.30, T:F.30, T:V.33, T:W.46, T:W.46, S:L.44, U:L.47 Metal complexes: T:H.37 Hydrogen bonds: S:Q.28 BCL.57: 18 residues within 4Å: Chain S: I.11, W.12, V.20 Chain T: F.22 Chain U: V.25, Q.28, I.29, G.32, H.36, W.46 Chain V: W.29, V.33, A.36, H.37 Ligands: BCL.54, CRT.55, BCL.58, CRT.59 11 PLIP interactions: 5 interactions with chain U, 2 interactions with chain V, 1 interactions with chain T, 3 interactions with chain S, Hydrophobic interactions: U:Q.28, U:W.46, U:W.46, U:W.46, V:W.29, V:W.29, T:F.22, S:I.11, S:W.12, S:V.20 Metal complexes: U:H.36 BCL.58: 13 residues within 4Å: Chain U: Q.28, L.31, G.32, I.35, H.36, V.39 Chain V: W.29, F.30, H.37, W.46 Ligands: BCL.57, CRT.59, BCL.61 9 PLIP interactions: 6 interactions with chain V, 3 interactions with chain U, Hydrophobic interactions: V:F.30, V:W.46, V:W.46, V:W.46, U:I.35, U:V.39 pi-Stacking: V:H.37 Metal complexes: V:H.37 Hydrogen bonds: U:Q.28 BCL.61: 18 residues within 4Å: Chain U: I.11, L.15, V.20 Chain V: F.22 Chain W: L.21, V.25, Q.28, I.29, H.36, W.46 Chain X: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.58, CRT.59, BCL.63 10 PLIP interactions: 2 interactions with chain X, 2 interactions with chain U, 1 interactions with chain V, 5 interactions with chain W, Hydrophobic interactions: X:W.29, X:W.29, U:I.11, U:V.20, V:F.22, W:L.21, W:Q.28, W:W.46, W:W.46 Metal complexes: W:H.36 BCL.63: 16 residues within 4Å: Chain W: Q.28, L.31, G.32, I.35, H.36 Chain X: W.29, F.30, V.33, H.37, L.38, W.41, W.46 Chain Y: L.47 Ligands: BCL.61, CRT.64, BCL.66 14 PLIP interactions: 3 interactions with chain W, 1 interactions with chain Y, 10 interactions with chain X, Hydrophobic interactions: W:L.31, W:I.35, Y:L.47, X:F.30, X:V.33, X:H.37, X:W.41, X:W.46, X:W.46, X:W.46, X:W.46 Hydrogen bonds: W:Q.28 pi-Stacking: X:H.37 Metal complexes: X:H.37 BCL.66: 19 residues within 4Å: Chain W: I.11, W.12, I.35 Chain X: F.22 Chain Y: V.25, Q.28, I.29, G.32, H.36, W.46 Chain Z: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.62, BCL.63, CRT.64, BCL.67 11 PLIP interactions: 4 interactions with chain Y, 4 interactions with chain W, 2 interactions with chain Z, 1 interactions with chain X, Hydrophobic interactions: Y:V.25, Y:Q.28, Y:W.46, W:I.11, W:I.11, W:W.12, W:I.35, Z:W.29, Z:W.29, X:F.22 Metal complexes: Y:H.36 BCL.67: 14 residues within 4Å: Chain Y: Q.28, L.31, G.32, I.35, H.36, D.43 Chain Z: W.29, F.30, V.33, H.37, W.41, W.46 Ligands: BCL.66, BCL.69 10 PLIP interactions: 3 interactions with chain Y, 7 interactions with chain Z, Hydrophobic interactions: Y:I.35, Z:V.33, Z:W.41, Z:W.46, Z:W.46, Z:W.46 Hydrogen bonds: Y:Q.28 pi-Stacking: Y:H.36, Z:H.37 Metal complexes: Z:H.37 BCL.69: 19 residues within 4Å: Chain 0: L.21, V.25, Q.28, I.29, G.32, H.36, W.46 Chain 1: W.29, L.32, V.33, A.36, H.37 Chain Y: I.11, W.12, L.15 Chain Z: F.22 Ligands: CRT.62, BCL.67, BCL.70 11 PLIP interactions: 2 interactions with chain 1, 7 interactions with chain 0, 1 interactions with chain Y, 1 interactions with chain Z, Hydrophobic interactions: 1:W.29, 1:A.36, 0:L.21, 0:V.25, 0:Q.28, 0:W.46, 0:W.46, 0:W.46, Y:I.11, Z:F.22 Metal complexes: 0:H.36 BCL.70: 15 residues within 4Å: Chain 0: Q.28, L.31, G.32, I.35, H.36, V.39 Chain 1: W.29, F.30, V.33, H.37, W.41, W.46 Ligands: BCL.69, CRT.71, BCL.73 12 PLIP interactions: 3 interactions with chain 0, 9 interactions with chain 1, Hydrophobic interactions: 0:I.35, 0:V.39, 1:F.30, 1:F.30, 1:V.33, 1:H.37, 1:W.46, 1:W.46, 1:W.46, 1:W.46 Hydrogen bonds: 0:Q.28 Metal complexes: 1:H.37 BCL.73: 18 residues within 4Å: Chain 0: I.11, W.12, L.15, V.20 Chain 1: F.22 Chain 2: V.25, Q.28, H.36, L.44, W.46 Chain 3: W.29, V.33, A.36, H.37 Ligands: BCL.70, CRT.71, BCL.75, CRT.76 14 PLIP interactions: 3 interactions with chain 0, 1 interactions with chain 1, 6 interactions with chain 2, 4 interactions with chain 3, Hydrophobic interactions: 0:I.11, 0:L.15, 0:V.20, 1:F.22, 2:V.25, 2:Q.28, 2:L.44, 2:W.46, 3:W.29, 3:W.29, 3:W.29, 3:A.36 pi-Stacking: 2:W.46 Metal complexes: 2:H.36 BCL.75: 15 residues within 4Å: Chain 2: Q.28, L.31, G.32, I.35, H.36, L.44 Chain 3: W.29, F.30, V.33, H.37, W.46 Chain 5: Y.43 Ligands: BCL.73, CRT.76, BCL.78 11 PLIP interactions: 8 interactions with chain 3, 3 interactions with chain 2, Hydrophobic interactions: 3:F.30, 3:F.30, 3:F.30, 3:V.33, 3:W.46, 3:W.46, 3:W.46, 2:L.31, 2:L.44 Metal complexes: 3:H.37 Hydrogen bonds: 2:Q.28 BCL.78: 18 residues within 4Å: Chain 2: I.11, W.12 Chain 3: F.22 Chain 4: L.21, Q.28, I.29, G.32, H.36, W.46 Chain 5: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.74, BCL.75, CRT.76, BCL.79 10 PLIP interactions: 2 interactions with chain 2, 3 interactions with chain 5, 1 interactions with chain 3, 4 interactions with chain 4, Hydrophobic interactions: 2:I.11, 2:W.12, 5:W.29, 5:W.29, 5:A.36, 3:F.22, 4:L.21, 4:Q.28, 4:W.46 Metal complexes: 4:H.36 BCL.79: 14 residues within 4Å: Chain 4: Q.28, L.31, G.32, I.35, H.36 Chain 5: W.29, F.30, V.33, H.37, W.46 Chain 6: L.47 Ligands: CRT.74, BCL.78, BCL.81 8 PLIP interactions: 1 interactions with chain 4, 6 interactions with chain 5, 1 interactions with chain 6, Hydrogen bonds: 4:Q.28 Hydrophobic interactions: 5:F.30, 5:V.33, 5:W.46, 5:W.46, 6:L.47 pi-Stacking: 5:H.37 Metal complexes: 5:H.37 BCL.81: 17 residues within 4Å: Chain 4: M.4, I.11 Chain 6: V.25, Q.28, I.29, G.32, H.36, V.39, W.46 Chain 7: W.29, V.33, A.36, H.37 Ligands: CRT.74, BCL.79, BCL.82, CRT.83 7 PLIP interactions: 1 interactions with chain 4, 6 interactions with chain 6, Hydrophobic interactions: 4:I.11, 6:V.25, 6:Q.28, 6:I.29, 6:V.39, 6:W.46 Metal complexes: 6:H.36 BCL.82: 13 residues within 4Å: Chain 6: Q.28, L.31, G.32, I.35, H.36 Chain 7: W.29, F.30, H.37, W.41, W.46 Ligands: BCL.81, CRT.83, BCL.85 11 PLIP interactions: 8 interactions with chain 7, 3 interactions with chain 6, Hydrophobic interactions: 7:F.30, 7:F.30, 7:W.41, 7:W.46, 7:W.46, 7:W.46, 7:W.46, 6:I.35, 6:I.35 Metal complexes: 7:H.37 Hydrogen bonds: 6:Q.28 BCL.85: 19 residues within 4Å: Chain 6: I.11, L.15, V.20 Chain 8: V.25, Q.28, I.29, G.32, H.36, W.46, L.47 Chain 9: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.23, BCL.82, CRT.83, BCL.86 7 PLIP interactions: 2 interactions with chain 9, 3 interactions with chain 8, 2 interactions with chain 6, Hydrophobic interactions: 9:W.29, 9:W.29, 8:Q.28, 8:W.46, 6:L.15, 6:V.20 Metal complexes: 8:H.36 BCL.86: 13 residues within 4Å: Chain 8: Q.28, L.31, G.32, I.35, H.36 Chain 9: W.29, F.30, V.33, H.37, W.46 Ligands: CRT.23, BCL.24, BCL.85 8 PLIP interactions: 7 interactions with chain 9, 1 interactions with chain 8, Hydrophobic interactions: 9:F.30, 9:V.33, 9:W.46, 9:W.46, 9:W.46, 9:W.46 Metal complexes: 9:H.37 Hydrogen bonds: 8:Q.28

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.7: 33 residues within 4Å: Chain B: F.42, T.43, G.46, V.47, I.50, I.98, C.101, A.102, A.105, W.109, E.113, V.126, F.130, F.132, A.133, Y.137, Y.157, G.158, H.162, A.246, L.247, A.250 Chain C: Y.210, A.213, L.214, A.217, M.218, W.252, T.255, M.256 Ligands: BCL.6, BCL.10, MQ8.15 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:V.47, B:I.98, B:A.105, B:F.130, B:F.130, B:F.130, B:F.132, B:A.133, B:Y.157, B:Y.157, B:L.247, B:A.250, C:Y.210, C:A.213 BPH.13: 20 residues within 4Å: Chain B: F.190, C.193, L.194, S.197, M.198, I.228, V.229 Chain C: S.60, I.61, S.125, I.126, W.129, L.146, A.149, F.150, A.153, A.273, V.277 Ligands: BCL.11, BCL.12 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:I.61, C:L.146, C:A.149, C:F.150, C:A.153, C:V.277, B:L.194 pi-Stacking: C:F.150

1 x UQ8: Ubiquinone-8(Non-covalent)

UQ8.8: 23 residues within 4Å: Chain B: F.128, F.188, T.191, L.194, M.198, H.199, L.202, E.221, N.222, F.225, S.232, I.233, G.234, A.235, I.238, L.241, L.243, F.244, L.247, F.251, W.252 Chain C: I.7 Ligands: BCL.11 24 PLIP interactions: 23 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:F.128, B:F.128, B:F.188, B:F.188, B:T.191, B:L.194, B:M.198, B:L.202, B:F.225, B:F.225, B:F.225, B:I.233, B:I.238, B:I.238, B:L.241, B:L.243, B:F.244, B:L.247, B:L.247, B:F.251, B:W.252, C:I.7 Hydrogen bonds: B:I.233, B:G.234

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.9: 4 residues within 4Å: Chain B: N.69, R.72 Chain D: A.3 Chain G: T.42 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.69 Salt bridges: B:R.72 PO4.18: 7 residues within 4Å: Chain C: G.26, Y.52, G.54, L.55, T.56, K.135 Chain O: R.19 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain O Hydrogen bonds: C:Y.52, C:L.55, C:T.56 Salt bridges: C:K.135, O:R.19 PO4.21: 4 residues within 4Å: Chain A: L.218 Chain D: D.10, A.11 Chain K: S.41 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain K Hydrogen bonds: D:A.11, K:S.41 PO4.22: 6 residues within 4Å: Chain C: H.301 Chain D: S.2, A.3, T.6, Q.13, W.17 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.2, D:S.2, D:S.2, D:A.3, D:Q.13, D:Q.13 Salt bridges: C:H.301

1 x FE: FE (III) ION(Non-covalent)

FE.14: 5 residues within 4Å: Chain B: H.199, H.239 Chain C: H.219, E.234, H.266 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Metal complexes: C:H.219, C:E.234, C:H.266, B:H.199, B:H.239

1 x MQ8: MENAQUINONE 8(Non-covalent)

MQ8.15: 17 residues within 4Å: Chain C: L.215, M.218, H.219, T.222, A.249, W.252, M.256, F.258, N.259, V.260, M.262, W.268 Chain D: G.51 Ligands: BCL.6, BPH.7, BCL.10, PEF.19 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:L.215, C:M.218, C:A.249, C:W.252, C:W.252, C:F.258, C:V.260, C:W.268 Hydrogen bonds: C:T.222, C:V.260 pi-Stacking: C:W.252

17 x CRT: SPIRILLOXANTHIN(Non-covalent)

CRT.16: 24 residues within 4Å: Chain C: I.68, I.71, G.72, F.73, F.90, L.116, G.119, L.120, T.123, Y.157, L.160, G.161, F.162, W.171, V.175, P.176, F.177, G.178, I.179, H.182 Chain O: I.38 Chain Q: M.37 Ligands: BCL.11, BCL.12 14 PLIP interactions: 13 interactions with chain C, 1 interactions with chain O Hydrophobic interactions: C:F.90, C:F.90, C:L.116, C:L.120, C:L.120, C:Y.157, C:L.160, C:F.162, C:W.171, C:V.175, C:V.175, C:I.179, C:H.182, O:I.38 CRT.23: 23 residues within 4Å: Chain 6: K.10, I.11, L.13 Chain 7: D.12 Chain 8: L.21, I.24, Q.28, I.38 Chain 9: E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain E: I.29, G.32, L.33, H.36, M.37 Ligands: BCL.24, BCL.85, BCL.86 21 PLIP interactions: 8 interactions with chain 9, 5 interactions with chain E, 3 interactions with chain 8, 5 interactions with chain 6 Hydrophobic interactions: 9:E.17, 9:F.18, 9:I.21, 9:I.21, 9:F.22, 9:F.22, 9:F.30, 9:F.30, E:I.29, E:L.33, E:L.33, E:L.33, E:M.37, 8:L.21, 8:I.24, 8:I.24, 6:K.10, 6:K.10, 6:I.11, 6:I.11, 6:I.11 CRT.25: 19 residues within 4Å: Chain E: L.8, K.10, I.11, L.13 Chain G: L.21, I.24, F.27, L.31, I.35, I.38 Chain H: E.17, F.18, I.21, F.22 Chain I: L.33, H.36, M.37 Ligands: BCL.31, BCL.33 17 PLIP interactions: 3 interactions with chain E, 2 interactions with chain I, 6 interactions with chain G, 6 interactions with chain H Hydrophobic interactions: E:K.10, E:I.11, E:I.11, I:L.33, I:H.36, G:L.21, G:I.24, G:F.27, G:L.31, G:L.31, G:I.38, H:E.17, H:F.18, H:F.18, H:I.21, H:I.21, H:F.22 CRT.28: 23 residues within 4Å: Chain 8: L.8, K.10, I.11, L.13, I.14 Chain 9: D.12 Chain E: L.21, I.24, F.27, Q.28, L.31, I.35 Chain F: E.17, F.18, I.21, F.22, S.25 Chain G: L.33, H.36, M.37 Ligands: BCL.24, BCL.27, BCL.30 20 PLIP interactions: 6 interactions with chain 8, 7 interactions with chain E, 6 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: 8:L.8, 8:K.10, 8:I.11, 8:I.11, 8:L.13, 8:I.14, E:L.21, E:I.24, E:F.27, E:F.27, E:L.31, E:L.31, E:I.35, F:E.17, F:F.18, F:F.18, F:I.21, F:I.21, F:F.22, G:H.36 CRT.35: 14 residues within 4Å: Chain G: K.10, I.11 Chain I: I.24, F.27, I.38 Chain J: E.17, F.18, I.21, F.22, M.26 Chain K: L.33, H.36, M.37 Ligands: BCL.37 16 PLIP interactions: 1 interactions with chain K, 4 interactions with chain I, 11 interactions with chain J Hydrophobic interactions: K:H.36, I:I.24, I:I.24, I:F.27, I:I.38, J:E.17, J:F.18, J:F.18, J:F.18, J:I.21, J:I.21, J:F.22, J:F.22, J:F.22, J:F.22, J:M.26 CRT.39: 22 residues within 4Å: Chain I: N.7, L.8, K.10, I.11 Chain K: L.21, I.24, F.27, Q.28, L.31, I.35, I.38 Chain L: E.17, F.18, I.21, F.22, S.25 Chain M: L.33, H.36, M.37 Ligands: BCL.37, BCL.38, BCL.41 15 PLIP interactions: 8 interactions with chain L, 1 interactions with chain M, 5 interactions with chain K, 1 interactions with chain I Hydrophobic interactions: L:E.17, L:F.18, L:F.18, L:F.18, L:I.21, L:I.21, L:F.22, L:F.22, M:H.36, K:I.24, K:F.27, K:Q.28, K:L.31, K:I.38, I:L.8 CRT.43: 18 residues within 4Å: Chain K: Y.9, K.10, L.13, I.14 Chain M: L.21, I.24, F.27, L.31, I.35 Chain N: F.18, I.21, F.22, S.25, M.26 Chain O: L.33, H.36 Ligands: BCL.42, BCL.45 17 PLIP interactions: 3 interactions with chain K, 7 interactions with chain M, 6 interactions with chain N, 1 interactions with chain O Hydrophobic interactions: K:L.13, K:L.13, K:I.14, M:L.21, M:L.21, M:I.24, M:I.24, M:I.24, M:F.27, M:I.35, N:F.18, N:F.18, N:I.21, N:F.22, N:F.22, N:F.22, O:H.36 CRT.47: 16 residues within 4Å: Chain M: K.10, I.11, I.14 Chain O: L.21, I.24, I.38 Chain P: E.14, E.17, F.18, I.21, F.22 Chain Q: L.33, H.36, M.37 Ligands: BCL.46, BCL.49 19 PLIP interactions: 12 interactions with chain P, 4 interactions with chain O, 2 interactions with chain M, 1 interactions with chain Q Hydrophobic interactions: P:E.14, P:F.18, P:F.18, P:F.18, P:I.21, P:I.21, P:F.22, P:F.22, P:F.22, P:F.22, P:F.22, O:L.21, O:L.21, O:I.24, O:I.38, M:K.10, M:I.14, Q:H.36 Hydrogen bonds: P:E.17 CRT.51: 18 residues within 4Å: Chain O: K.10, I.11 Chain Q: Q.28, L.31, I.35 Chain R: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain S: L.33, H.36, M.37 Ligands: BCL.49, BCL.50, BCL.53 14 PLIP interactions: 6 interactions with chain R, 2 interactions with chain S, 3 interactions with chain Q, 3 interactions with chain O Hydrophobic interactions: R:F.18, R:F.18, R:I.21, R:F.22, R:F.22, R:M.26, S:L.33, S:H.36, Q:L.31, Q:L.31, Q:I.35, O:K.10, O:I.11, O:I.11 CRT.55: 18 residues within 4Å: Chain Q: K.10, I.11, I.14 Chain S: L.21, I.24, F.27, Q.28, L.31, I.35 Chain T: E.14, E.17, F.18, F.22 Chain U: L.33, H.36, M.37 Ligands: BCL.54, BCL.57 17 PLIP interactions: 7 interactions with chain S, 2 interactions with chain Q, 6 interactions with chain T, 2 interactions with chain U Hydrophobic interactions: S:L.21, S:I.24, S:I.24, S:F.27, S:F.27, S:L.31, S:L.31, Q:K.10, Q:I.14, T:E.17, T:F.18, T:F.18, T:F.22, T:F.22, T:F.22, U:L.33, U:H.36 CRT.59: 19 residues within 4Å: Chain C: F.84 Chain S: K.10, I.11, L.13, I.14 Chain U: L.21, Q.28 Chain V: F.18, I.21, F.22, S.25, M.26 Chain W: G.32, L.33, H.36, M.37 Ligands: BCL.57, BCL.58, BCL.61 11 PLIP interactions: 7 interactions with chain V, 3 interactions with chain S, 1 interactions with chain U Hydrophobic interactions: V:F.18, V:F.18, V:I.21, V:I.21, V:F.22, V:F.22, V:F.22, S:I.11, S:L.13, S:I.14, U:L.21 CRT.62: 18 residues within 4Å: Chain 0: L.33, H.36, M.37 Chain W: K.10, I.11, L.13 Chain Y: I.24, Q.28, L.31, I.35 Chain Z: E.17, F.18, I.21, F.22, S.25, M.26 Ligands: BCL.66, BCL.69 14 PLIP interactions: 3 interactions with chain Y, 3 interactions with chain W, 7 interactions with chain Z, 1 interactions with chain 0 Hydrophobic interactions: Y:I.24, Y:I.24, Y:L.31, W:I.11, W:L.13, Z:F.18, Z:F.18, Z:I.21, Z:F.22, Z:F.22, Z:F.22, Z:M.26, 0:H.36 Hydrogen bonds: W:K.10 CRT.64: 23 residues within 4Å: Chain U: Y.9, K.10, I.11, L.13, I.14 Chain W: L.21, I.24, F.27, Q.28, L.31, L.34, I.35 Chain X: F.18, I.21, F.22, S.25, M.26, F.30 Chain Y: L.33, H.36, M.37 Ligands: BCL.63, BCL.66 13 PLIP interactions: 1 interactions with chain Y, 6 interactions with chain X, 4 interactions with chain U, 2 interactions with chain W Hydrophobic interactions: Y:L.33, X:F.18, X:F.18, X:I.21, X:F.22, X:F.22, X:F.30, U:I.11, U:L.13, U:L.13, U:I.14, W:F.27, W:L.31 CRT.71: 20 residues within 4Å: Chain 0: Q.28, L.31, I.35, I.38 Chain 1: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain 2: L.33, H.36, M.37, L.40, W.46 Chain Y: K.10, I.14 Ligands: BCL.70, BCL.73 14 PLIP interactions: 3 interactions with chain 0, 8 interactions with chain 1, 2 interactions with chain 2, 1 interactions with chain Y Hydrophobic interactions: 0:L.31, 0:I.35, 0:I.38, 1:E.14, 1:F.18, 1:F.18, 1:I.21, 1:F.22, 1:F.22, 1:F.22, 1:M.26, 2:H.36, 2:W.46, Y:I.14 CRT.74: 23 residues within 4Å: Chain 2: K.10, I.11, L.13, I.14 Chain 4: L.21, I.24, Q.28, L.31, I.35, I.38 Chain 5: E.17, F.18, I.21, F.22, S.25, M.26 Chain 6: I.29, L.33, H.36, M.37 Ligands: BCL.78, BCL.79, BCL.81 15 PLIP interactions: 6 interactions with chain 5, 3 interactions with chain 4, 3 interactions with chain 6, 3 interactions with chain 2 Hydrophobic interactions: 5:F.18, 5:F.18, 5:F.18, 5:I.21, 5:F.22, 5:F.22, 4:L.21, 4:I.24, 4:I.38, 6:I.29, 6:L.33, 6:H.36, 2:I.11, 2:L.13, 2:I.14 CRT.76: 19 residues within 4Å: Chain 0: K.10, I.11, L.13, I.14 Chain 2: Q.28, L.31, I.35, I.38 Chain 3: F.18, I.21, F.22, S.25, M.26 Chain 4: L.33, H.36, M.37 Ligands: BCL.73, BCL.75, BCL.78 11 PLIP interactions: 6 interactions with chain 3, 2 interactions with chain 0, 1 interactions with chain 4, 2 interactions with chain 2 Hydrophobic interactions: 3:F.18, 3:I.21, 3:I.21, 3:I.21, 3:F.22, 3:M.26, 0:K.10, 0:I.11, 4:H.36, 2:L.31, 2:I.38 CRT.83: 16 residues within 4Å: Chain 4: N.7, L.8, K.10, I.11, L.13 Chain 6: L.21, Q.28, L.31 Chain 7: F.18, F.22, M.26 Chain 8: L.33, H.36 Ligands: BCL.81, BCL.82, BCL.85 11 PLIP interactions: 3 interactions with chain 4, 1 interactions with chain 8, 5 interactions with chain 7, 2 interactions with chain 6 Hydrophobic interactions: 4:L.8, 4:K.10, 4:L.13, 8:H.36, 7:F.18, 7:F.18, 7:F.22, 7:F.22, 7:M.26, 6:L.21, 6:L.31

2 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)

PGW.17: 6 residues within 4Å: Chain C: I.31, G.32, R.33, I.35 Chain Q: R.19 Chain S: R.18 4 PLIP interactions: 1 interactions with chain Q, 2 interactions with chain C, 1 interactions with chain S Hydrogen bonds: Q:R.19, C:R.33, S:R.18 Hydrophobic interactions: C:I.35 PGW.20: 4 residues within 4Å: Chain C: H.145, R.267, W.271 Chain D: Y.29 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D Salt bridges: C:H.145, C:R.267 Hydrogen bonds: B:N.208 Hydrophobic interactions: D:Y.29

1 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.19: 14 residues within 4Å: Chain B: P.29, F.30 Chain C: R.253, M.256, G.257, F.258 Chain D: R.31, K.35, Y.39, R.48, S.49, G.57, F.58 Ligands: MQ8.15 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:F.258 Hydrogen bonds: C:G.257, C:F.258, D:F.58 Salt bridges: D:R.31, D:R.31, D:K.35, D:R.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niwa, S. et al., Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom. Nature (2014)

Release Date

2014-04-09

Peptides

Photosynthetic reaction center C subunit: A
Photosynthetic reaction center L subunit: B
Photosynthetic reaction center M subunit: C
Photosynthetic reaction center H subunit: D
LH1 alpha polypeptide: EGIKMOQSUWY02468
LH1 beta polypeptide: FHJLNPRTVXZ13579

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
L

C
M

D
H

E
A

G
D

I
F

K
I

M
K

O
O

Q
Q

S
S

U
U

W
W

Y
Y

0
1

2
3

4
5

6
7

8
9

F
B

H
E

J
G

L
J

N
N

P
P

R
R

T
T

V
V

X
X

Z
Z

1
2

3
4

5
6

7
8

9
0

Membrane

We predict this structure to be a membrane protein.
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Photosynthetic reaction center C subunit

Photosynthetic reaction center L subunit

Photosynthetic reaction center M subunit

Photosynthetic reaction center H subunit

LH1 alpha polypeptide

LH1 beta polypeptide

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