SMTL ID : 5b5n.2 (1 other biounit)

Crystal structure of the Ba-substituted LH1-RC complex from Tch. tepidum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-1-16-16-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 20 residues within 4Å: Chain A: Y.76, Q.77, N.78, V.79, Q.80, V.81, L.82, F.90, M.94, V.97, T.98, C.107, C.110, H.111, W.116, A.117, K.124, S.127, R.128 Ligands: HEM.2 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:Y.76, A:Y.76, A:Y.76, A:V.79, A:L.82, A:F.90, A:M.94, A:V.97, A:T.98, A:W.116, A:W.116, A:R.128 Hydrogen bonds: A:Q.77, A:N.78, A:N.78, A:Q.80, A:V.81, A:L.82 Salt bridges: A:K.124, A:R.128 pi-Stacking: A:F.90 Metal complexes: A:H.111 HEM.2: 25 residues within 4Å: Chain A: V.97, V.101, Y.109, Y.122, T.123, V.126, S.127, M.130, L.133, V.134, T.151, C.152, C.155, H.156, P.160, V.161, P.162, I.284, L.291, R.295, L.303, R.304, V.305 Ligands: HEM.1, HEM.4 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:V.97, A:V.101, A:V.101, A:V.126, A:M.130, A:L.133, A:V.134, A:V.161, A:P.162, A:I.284, A:V.305 Hydrogen bonds: A:Y.109, A:Y.122 Salt bridges: A:R.295, A:R.295 Metal complexes: A:H.156 HEM.3: 24 residues within 4Å: Chain A: I.210, R.211, I.212, T.213, F.233, M.236, M.237, I.239, S.240, L.243, C.247, C.250, H.251, F.256, N.257, W.259, R.266, A.269, W.270, R.274 Chain B: Y.171, L.174 Chain C: I.191, Y.317 20 PLIP interactions: 16 interactions with chain A, 3 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: A:I.210, A:F.233, A:M.236, A:I.239, A:L.243, A:F.256, A:F.256, A:F.256, A:N.257, A:W.259, A:R.266, A:W.270, C:I.191, C:I.191, B:Y.171 Hydrogen bonds: A:I.212, A:T.213, C:Y.317 Salt bridges: A:R.274 Metal complexes: A:H.251 HEM.4: 25 residues within 4Å: Chain A: H.144, V.145, A.146, T.148, G.149, V.150, L.204, I.239, L.243, F.249, K.265, T.268, A.269, A.272, I.273, V.276, V.305, S.306, C.307, C.310, H.311, N.315, K.316, P.317 Ligands: HEM.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:V.145, A:V.150, A:L.204, A:I.239, A:L.243, A:T.268, A:A.269, A:A.272, A:I.273, A:V.305, A:P.317 Hydrogen bonds: A:T.148, A:N.315 Salt bridges: A:K.265, A:K.316, A:K.316 Metal complexes: A:H.144

19 x BA: BARIUM ION(Non-covalent)

BA.5: 4 residues within 4Å: Chain A: N.42, Y.43 Chain B: Q.172, T.265 Ligand excluded by PLIP BA.12: 4 residues within 4Å: Chain B: P.61, Q.66 Chain E: S.41 Chain G: D.48 Ligand excluded by PLIP BA.13: 1 residues within 4Å: Chain B: W.281 Ligand excluded by PLIP BA.30: 5 residues within 4Å: Chain E: D.43, N.45, D.49 Chain G: Y.55, Q.56 Ligand excluded by PLIP BA.31: 7 residues within 4Å: Chain 8: D.43, N.45, D.49, I.51 Chain 9: R.44 Chain E: Y.55, Q.56 Ligand excluded by PLIP BA.35: 5 residues within 4Å: Chain G: D.43, N.45, D.49 Chain I: Y.55, Q.56 Ligand excluded by PLIP BA.39: 6 residues within 4Å: Chain I: D.43, N.45, D.49, I.51 Chain K: Y.55, Q.56 Ligand excluded by PLIP BA.44: 5 residues within 4Å: Chain K: D.43, N.45, D.49 Chain M: Y.55, Q.56 Ligand excluded by PLIP BA.47: 5 residues within 4Å: Chain M: N.45, D.49 Chain N: R.44 Chain O: Y.55, Q.56 Ligand excluded by PLIP BA.50: 6 residues within 4Å: Chain O: D.43, N.45, D.49, I.51 Chain Q: Y.55, Q.56 Ligand excluded by PLIP BA.56: 6 residues within 4Å: Chain Q: D.43, L.44, N.45, D.49 Chain R: R.44 Chain S: Y.55 Ligand excluded by PLIP BA.60: 6 residues within 4Å: Chain S: D.43, N.45, D.49 Chain T: R.44 Chain U: Y.55, Q.56 Ligand excluded by PLIP BA.64: 4 residues within 4Å: Chain U: D.48, D.49 Chain W: Y.55, Q.56 Ligand excluded by PLIP BA.69: 5 residues within 4Å: Chain W: D.43, N.45, D.49 Chain Y: Y.55, Q.56 Ligand excluded by PLIP BA.72: 5 residues within 4Å: Chain 0: Y.55, Q.56 Chain Y: D.43, N.45, D.49 Ligand excluded by PLIP BA.76: 6 residues within 4Å: Chain 0: D.43, N.45, D.49 Chain 1: R.44 Chain 2: Y.55, Q.56 Ligand excluded by PLIP BA.80: 7 residues within 4Å: Chain 2: D.43, N.45, D.49, I.51 Chain 3: R.44 Chain 4: Y.55, Q.56 Ligand excluded by PLIP BA.84: 5 residues within 4Å: Chain 4: D.43, N.45, D.49 Chain 6: Y.55, Q.56 Ligand excluded by PLIP BA.88: 5 residues within 4Å: Chain 6: D.43, N.45, D.49 Chain 8: Y.55, Q.56 Ligand excluded by PLIP

36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.6: 24 residues within 4Å: Chain B: F.106, A.133, I.134, A.136, Y.137, L.140, V.166, S.167, G.170, F.176, H.177, H.182, A.185, I.186, F.189, S.253, C.256, I.257 Chain C: Y.197, Y.210 Ligands: BPH.7, BCL.8, BCL.10, BCL.15 17 PLIP interactions: 17 interactions with chain B, Hydrophobic interactions: B:F.106, B:F.106, B:F.106, B:A.133, B:A.136, B:Y.137, B:V.166, B:F.176, B:F.176, B:F.176, B:A.185, B:I.186, B:I.186, B:F.189, B:I.257 pi-Stacking: B:H.182 Metal complexes: B:H.182 BCL.8: 14 residues within 4Å: Chain B: M.183, I.186, S.187, F.190, T.191 Chain C: L.160, I.179, H.182, L.183, T.186 Ligands: BCL.6, BCL.15, BPH.16, CRT.18 9 PLIP interactions: 3 interactions with chain C, 6 interactions with chain B, Hydrophobic interactions: C:L.160, B:I.186, B:I.186, B:T.191 pi-Stacking: C:H.182, B:F.190, B:F.190 Metal complexes: C:H.182 Hydrogen bonds: B:T.191 BCL.10: 18 residues within 4Å: Chain B: Y.137, L.140, F.155, I.159, L.160, H.162, L.163, V.166 Chain C: Y.197, M.203, I.206, A.207, Y.210, L.214 Ligands: BCL.6, BPH.7, BCL.15, MQ8.17 13 PLIP interactions: 8 interactions with chain B, 5 interactions with chain C, Hydrophobic interactions: B:Y.137, B:L.140, B:F.155, B:F.155, B:F.155, B:L.163, B:V.166, C:Y.197, C:I.206, C:A.207, C:L.214 Metal complexes: B:H.162 pi-Stacking: C:Y.210 BCL.15: 26 residues within 4Å: Chain B: H.177, F.190 Chain C: I.68, I.126, F.156, Y.157, L.160, T.186, A.187, F.189, S.190, L.196, Y.197, H.202, S.205, I.206, L.209, Y.210, A.280, G.283, I.284 Ligands: BCL.6, BCL.8, BCL.10, BPH.16, CRT.18 14 PLIP interactions: 13 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:I.68, C:F.156, C:F.156, C:Y.157, C:T.186, C:F.189, C:L.196, C:I.206, C:L.209, C:Y.210, B:F.190 Hydrogen bonds: C:Y.197 Salt bridges: C:H.202 pi-Stacking: C:H.202 BCL.27: 19 residues within 4Å: Chain 8: F.2, T.3, I.11, W.12, V.20 Chain 9: F.22 Chain E: V.25, Q.28, H.36, W.46 Chain F: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.28, CRT.29, CRT.32, BCL.92 12 PLIP interactions: 1 interactions with chain 9, 3 interactions with chain 8, 2 interactions with chain F, 6 interactions with chain E, Hydrophobic interactions: 9:F.22, 8:I.11, 8:W.12, 8:V.20, F:W.29, F:A.36, E:V.25, E:V.25, E:Q.28, E:W.46, E:W.46, E:W.46 BCL.28: 13 residues within 4Å: Chain E: Q.28, L.31, G.32, I.35, H.36, V.39 Chain F: V.33, V.34, H.37, W.46 Ligands: BCL.27, CRT.32, BCL.34 7 PLIP interactions: 5 interactions with chain F, 2 interactions with chain E, Hydrophobic interactions: F:V.33, F:V.34, F:W.46, F:W.46, E:V.39 Metal complexes: F:H.37 Hydrogen bonds: E:Q.28 BCL.34: 22 residues within 4Å: Chain E: V.20, S.23, I.24, I.35 Chain F: L.47 Chain G: V.22, V.25, Q.28, I.29, G.32, H.36, W.46 Chain H: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: BCL.28, CRT.32, PEF.33, BCL.37 18 PLIP interactions: 4 interactions with chain E, 9 interactions with chain G, 4 interactions with chain H, 1 interactions with chain F, Hydrophobic interactions: E:V.20, E:V.20, E:I.24, E:I.35, G:V.22, G:V.22, G:V.25, G:W.46, G:W.46, G:W.46, G:W.46, H:W.29, H:W.29, H:A.36, H:A.40, F:L.47 pi-Stacking: G:H.36 Metal complexes: G:H.36 BCL.37: 16 residues within 4Å: Chain G: Q.28, L.31, G.32, I.35, H.36, V.39, L.44 Chain H: W.29, F.30, V.33, V.34, H.37, W.46 Ligands: BCL.34, CRT.36, BCL.38 12 PLIP interactions: 4 interactions with chain G, 8 interactions with chain H, Hydrophobic interactions: G:L.31, G:V.39, G:L.44, H:F.30, H:V.33, H:V.34, H:W.46, H:W.46, H:W.46 Hydrogen bonds: G:Q.28 pi-Stacking: H:H.37 Metal complexes: H:H.37 BCL.38: 14 residues within 4Å: Chain H: F.22, M.23 Chain I: V.25, Q.28, I.29, H.36, W.46 Chain J: W.29, V.33, A.36, H.37 Ligands: CRT.36, BCL.37, BCL.41 10 PLIP interactions: 4 interactions with chain J, 5 interactions with chain I, 1 interactions with chain H, Hydrophobic interactions: J:W.29, J:W.29, J:W.29, J:A.36, I:Q.28, I:I.29, I:W.46, H:F.22 pi-Stacking: I:H.36, I:H.36 BCL.41: 16 residues within 4Å: Chain I: Q.28, L.31, G.32, I.35, H.36, L.44 Chain J: F.30, V.33, V.34, H.37, W.41, W.46 Chain K: L.47 Ligands: BCL.38, CRT.40, BCL.42 14 PLIP interactions: 10 interactions with chain J, 3 interactions with chain I, 1 interactions with chain K, Hydrophobic interactions: J:F.30, J:V.33, J:V.33, J:H.37, J:W.41, J:W.41, J:W.41, J:W.46, J:W.46, I:I.35, I:L.44, K:L.47 Metal complexes: J:H.37 Hydrogen bonds: I:Q.28 BCL.42: 17 residues within 4Å: Chain I: S.23, I.24, F.27 Chain K: V.25, Q.28, I.29, G.32, H.36, W.46 Chain L: W.29, V.33, A.36, H.37, A.40 Ligands: CRT.40, BCL.41, BCL.43 13 PLIP interactions: 2 interactions with chain L, 3 interactions with chain I, 8 interactions with chain K, Hydrophobic interactions: L:W.29, L:A.40, I:I.24, I:F.27, I:F.27, K:V.25, K:Q.28, K:I.29, K:W.46, K:W.46, K:W.46 pi-Stacking: K:H.36 Metal complexes: K:H.36 BCL.43: 14 residues within 4Å: Chain K: Q.28, G.32, I.35, H.36 Chain L: F.30, V.33, V.34, H.37, A.40, W.41, W.46 Ligands: BCL.42, CRT.45, BCL.46 6 PLIP interactions: 1 interactions with chain K, 5 interactions with chain L, Hydrogen bonds: K:Q.28 Hydrophobic interactions: L:V.33, L:H.37, L:A.40, L:W.41, L:W.46 BCL.46: 17 residues within 4Å: Chain K: L.8, I.11, I.35 Chain L: M.23 Chain M: I.29, H.36, V.39, W.46 Chain N: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.43, CRT.45, CRT.48, BCL.49 9 PLIP interactions: 1 interactions with chain N, 4 interactions with chain K, 4 interactions with chain M, Hydrophobic interactions: N:W.29, K:L.8, K:I.11, K:I.35, K:I.35, M:V.39, M:W.46, M:W.46, M:W.46 BCL.49: 14 residues within 4Å: Chain M: Q.28, L.31, G.32, I.35, H.36 Chain N: W.29, F.30, V.33, H.37, W.41, W.46 Ligands: BCL.46, CRT.48, BCL.51 9 PLIP interactions: 7 interactions with chain N, 2 interactions with chain M, Hydrophobic interactions: N:F.30, N:V.33, N:V.33, N:H.37, N:W.41, N:W.41, N:W.46, M:I.35 Hydrogen bonds: M:Q.28 BCL.51: 15 residues within 4Å: Chain M: I.35 Chain N: M.26 Chain O: Q.28, I.29, H.36, V.39, W.46 Chain P: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.48, BCL.49, BCL.52 11 PLIP interactions: 6 interactions with chain O, 4 interactions with chain P, 1 interactions with chain M, Hydrophobic interactions: O:Q.28, O:V.39, O:W.46, O:W.46, O:W.46, O:W.46, P:W.29, P:W.29, P:W.29, P:A.36, M:I.35 BCL.52: 15 residues within 4Å: Chain O: Q.28, L.31, G.32, I.35, H.36, L.44 Chain P: F.30, V.33, H.37, W.41, W.46, L.47 Ligands: BCL.51, CRT.53, BCL.54 12 PLIP interactions: 10 interactions with chain P, 2 interactions with chain O, Hydrophobic interactions: P:V.33, P:V.33, P:W.41, P:W.41, P:W.46, P:W.46, P:W.46, P:L.47, O:L.44 pi-Stacking: P:H.37 Metal complexes: P:H.37 Hydrogen bonds: O:Q.28 BCL.54: 15 residues within 4Å: Chain O: I.35 Chain P: F.30 Chain Q: Q.28, I.29, H.36, V.39, W.46 Chain R: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.52, CRT.53, BCL.55 14 PLIP interactions: 6 interactions with chain Q, 6 interactions with chain R, 1 interactions with chain O, 1 interactions with chain P, Hydrophobic interactions: Q:Q.28, Q:I.29, Q:V.39, Q:W.46, Q:W.46, R:W.29, R:W.29, R:W.29, R:W.29, R:L.32, R:A.36, O:I.35, P:F.30 Metal complexes: Q:H.36 BCL.55: 15 residues within 4Å: Chain Q: Q.28, L.31, G.32, I.35, H.36 Chain R: W.29, F.30, V.33, H.37, L.38, W.41, W.46 Ligands: BCL.54, CRT.57, BCL.61 7 PLIP interactions: 2 interactions with chain Q, 5 interactions with chain R, Hydrophobic interactions: Q:I.35, R:V.33, R:V.33, R:L.38, R:W.46 Hydrogen bonds: Q:Q.28 Metal complexes: R:H.37 BCL.59: 15 residues within 4Å: Chain S: Q.28, L.31, G.32, I.35, H.36, V.39, L.44 Chain T: F.30, V.33, H.37, W.41, W.46 Ligands: BCL.61, CRT.62, BCL.65 11 PLIP interactions: 7 interactions with chain T, 4 interactions with chain S, Hydrophobic interactions: T:V.33, T:V.33, T:W.41, T:W.46, S:I.35, S:V.39 pi-Stacking: T:H.37 pi-Cation interactions: T:H.37 Metal complexes: T:H.37 Hydrogen bonds: S:Q.28, S:H.36 BCL.61: 18 residues within 4Å: Chain Q: L.15, V.20, S.23, I.35 Chain S: V.22, V.25, I.29, H.36, W.46 Chain T: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.55, CRT.57, BCL.59, CRT.62 13 PLIP interactions: 7 interactions with chain S, 3 interactions with chain Q, 3 interactions with chain T, Hydrophobic interactions: S:V.22, S:V.25, S:V.25, S:W.46, S:W.46, S:W.46, Q:L.15, Q:V.20, Q:I.35, T:W.29, T:W.29, T:A.36 Metal complexes: S:H.36 BCL.63: 16 residues within 4Å: Chain U: Q.28, L.31, G.32, I.35, H.36, V.39, L.44 Chain V: F.30, V.33, V.34, H.37, W.46, L.47 Ligands: BCL.65, CRT.66, BCL.67 15 PLIP interactions: 4 interactions with chain U, 11 interactions with chain V, Hydrophobic interactions: U:I.35, U:V.39, U:L.44, V:F.30, V:F.30, V:V.33, V:V.34, V:W.46, V:W.46, V:W.46, V:W.46 Hydrogen bonds: U:Q.28 pi-Stacking: V:H.37, V:H.37 Metal complexes: V:H.37 BCL.65: 19 residues within 4Å: Chain S: L.15, I.24, I.35 Chain U: V.25, Q.28, I.29, H.36, V.39, W.46 Chain V: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: BCL.59, CRT.62, BCL.63, CRT.66 18 PLIP interactions: 9 interactions with chain U, 4 interactions with chain S, 5 interactions with chain V, Hydrophobic interactions: U:V.25, U:Q.28, U:I.29, U:V.39, U:W.46, U:W.46, U:W.46, S:L.15, S:I.24, S:I.35, S:I.35, V:W.29, V:W.29, V:W.29, V:A.36, V:A.40 pi-Stacking: U:H.36 Metal complexes: U:H.36 BCL.67: 18 residues within 4Å: Chain U: I.11, I.24, I.35 Chain W: V.25, I.29, H.36, V.39, W.46 Chain X: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: BCL.63, CRT.66, BCL.68, CRT.70 9 PLIP interactions: 3 interactions with chain X, 4 interactions with chain W, 2 interactions with chain U, Hydrophobic interactions: X:W.29, X:A.36, X:A.40, W:V.39, W:W.46, W:W.46, U:I.11, U:I.24 Metal complexes: W:H.36 BCL.68: 15 residues within 4Å: Chain W: Q.28, L.31, G.32, I.35, H.36 Chain X: W.29, F.30, V.33, V.34, H.37, W.46 Chain Y: L.47 Ligands: BCL.67, CRT.70, BCL.71 11 PLIP interactions: 1 interactions with chain W, 9 interactions with chain X, 1 interactions with chain Y, Hydrogen bonds: W:Q.28 Hydrophobic interactions: X:F.30, X:V.33, X:V.33, X:V.34, X:H.37, X:W.46, X:W.46, Y:L.47 pi-Stacking: X:H.37 Metal complexes: X:H.37 BCL.71: 16 residues within 4Å: Chain W: L.8, I.35 Chain Y: V.25, Q.28, I.29, H.36, V.39, W.46 Chain Z: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.68, CRT.70, BCL.74 14 PLIP interactions: 1 interactions with chain W, 10 interactions with chain Y, 3 interactions with chain Z, Hydrophobic interactions: W:I.35, Y:V.25, Y:Q.28, Y:I.29, Y:V.39, Y:W.46, Y:W.46, Y:W.46, Y:W.46, Z:W.29, Z:W.29, Z:A.36 pi-Stacking: Y:H.36 Metal complexes: Y:H.36 BCL.74: 13 residues within 4Å: Chain Y: Q.28, L.31, G.32, I.35, H.36 Chain Z: F.30, V.33, H.37, W.41, W.46, L.47 Ligands: BCL.71, BCL.75 14 PLIP interactions: 13 interactions with chain Z, 1 interactions with chain Y, Hydrophobic interactions: Z:F.30, Z:V.33, Z:V.33, Z:H.37, Z:W.41, Z:W.41, Z:W.46, Z:W.46, Z:W.46, Z:W.46, Z:W.46, Z:L.47 Metal complexes: Z:H.37 Hydrogen bonds: Y:Q.28 BCL.75: 17 residues within 4Å: Chain 0: V.25, I.29, H.36, V.39, W.46 Chain 1: W.29, L.32, V.33, A.36, H.37 Chain Y: R.19, V.20, S.23, I.35 Ligands: CRT.73, BCL.74, BCL.78 12 PLIP interactions: 8 interactions with chain 0, 3 interactions with chain Y, 1 interactions with chain 1, Hydrophobic interactions: 0:V.25, 0:I.29, 0:I.29, 0:V.39, 0:W.46, 0:W.46, 0:W.46, Y:R.19, Y:V.20, Y:I.35, 1:A.36 pi-Stacking: 0:H.36 BCL.78: 15 residues within 4Å: Chain 0: Q.28, L.31, G.32, I.35, H.36 Chain 1: W.29, F.30, V.33, V.34, H.37, W.41, W.46 Ligands: BCL.75, CRT.77, BCL.79 10 PLIP interactions: 8 interactions with chain 1, 2 interactions with chain 0, Hydrophobic interactions: 1:F.30, 1:V.33, 1:V.33, 1:V.34, 1:W.41, 1:W.41, 1:W.46, 0:I.35 Metal complexes: 1:H.37 Hydrogen bonds: 0:Q.28 BCL.79: 17 residues within 4Å: Chain 0: S.23, I.24, F.27, I.35 Chain 2: V.25, Q.28, I.29, H.36, W.46 Chain 3: W.29, V.33, A.36, H.37 Ligands: CRT.77, BCL.78, CRT.81, BCL.82 13 PLIP interactions: 8 interactions with chain 2, 1 interactions with chain 3, 4 interactions with chain 0, Hydrophobic interactions: 2:V.25, 2:V.25, 2:I.29, 2:W.46, 2:W.46, 2:W.46, 3:W.29, 0:I.24, 0:F.27, 0:F.27, 0:I.35 pi-Stacking: 2:H.36 Metal complexes: 2:H.36 BCL.82: 15 residues within 4Å: Chain 2: Q.28, L.31, G.32, I.35, H.36, L.44 Chain 3: W.29, F.30, V.33, H.37, W.41, W.46 Ligands: BCL.79, CRT.81, BCL.83 8 PLIP interactions: 6 interactions with chain 3, 2 interactions with chain 2, Hydrophobic interactions: 3:H.37, 3:W.41, 3:W.41, 3:W.46, 3:W.46, 2:I.35, 2:L.44 Metal complexes: 3:H.37 BCL.83: 18 residues within 4Å: Chain 2: I.11, W.12, I.35 Chain 3: F.30 Chain 4: Q.28, I.29, G.32, H.36, V.39, W.46 Chain 5: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.81, BCL.82, BCL.86 13 PLIP interactions: 7 interactions with chain 4, 3 interactions with chain 2, 2 interactions with chain 5, 1 interactions with chain 3, Hydrophobic interactions: 4:Q.28, 4:V.39, 4:W.46, 4:W.46, 4:W.46, 4:W.46, 2:I.11, 2:W.12, 2:I.35, 5:W.29, 5:W.29, 3:F.30 Metal complexes: 4:H.36 BCL.86: 15 residues within 4Å: Chain 4: Q.28, L.31, G.32, I.35, H.36 Chain 5: W.29, F.30, V.33, V.34, H.37, A.40, W.46 Ligands: BCL.83, CRT.85, BCL.87 13 PLIP interactions: 11 interactions with chain 5, 2 interactions with chain 4, Hydrophobic interactions: 5:F.30, 5:F.30, 5:V.33, 5:V.33, 5:V.34, 5:A.40, 5:W.46, 5:W.46, 5:W.46, 5:W.46, 4:I.35 Metal complexes: 5:H.37 Hydrogen bonds: 4:Q.28 BCL.87: 16 residues within 4Å: Chain 4: I.35 Chain 5: F.22, M.26 Chain 6: V.25, Q.28, I.29, G.32, H.36, V.39, W.46 Chain 7: W.29, A.36, H.37 Ligands: CRT.85, BCL.86, BCL.90 13 PLIP interactions: 8 interactions with chain 6, 2 interactions with chain 5, 1 interactions with chain 4, 2 interactions with chain 7, Hydrophobic interactions: 6:V.25, 6:I.29, 6:V.39, 6:W.46, 6:W.46, 6:W.46, 6:W.46, 5:F.22, 5:F.22, 4:I.35, 7:W.29, 7:W.29 pi-Stacking: 6:H.36 BCL.90: 17 residues within 4Å: Chain 6: Q.28, L.31, G.32, I.35, H.36, L.44 Chain 7: W.29, F.30, V.33, H.37, W.41, W.46 Chain 8: W.46, L.47 Ligands: BCL.87, CRT.89, BCL.91 12 PLIP interactions: 1 interactions with chain 6, 10 interactions with chain 7, 1 interactions with chain 8, Hydrophobic interactions: 6:L.44, 7:F.30, 7:F.30, 7:V.33, 7:H.37, 7:W.41, 7:W.46, 7:W.46, 7:W.46, 7:W.46, 8:L.47 Metal complexes: 7:H.37 BCL.91: 14 residues within 4Å: Chain 6: W.12, I.24, I.35 Chain 8: V.25, Q.28, I.29, H.36, W.46 Chain 9: W.29, A.36, H.37 Ligands: CRT.89, BCL.90, BCL.92 16 PLIP interactions: 2 interactions with chain 9, 9 interactions with chain 8, 5 interactions with chain 6, Hydrophobic interactions: 9:W.29, 9:A.36, 8:V.25, 8:Q.28, 8:I.29, 8:W.46, 8:W.46, 8:W.46, 8:W.46, 6:W.12, 6:I.24, 6:I.24, 6:I.35, 6:I.35 pi-Stacking: 8:H.36 Metal complexes: 8:H.36 BCL.92: 14 residues within 4Å: Chain 8: Q.28, L.31, G.32, I.35, H.36 Chain 9: F.30, V.33, H.37, A.40, W.41, W.46 Ligands: BCL.27, CRT.29, BCL.91 9 PLIP interactions: 8 interactions with chain 9, 1 interactions with chain 8, Hydrophobic interactions: 9:V.33, 9:V.33, 9:H.37, 9:A.40, 9:W.41, 9:W.46, 9:W.46, 9:W.46 Hydrogen bonds: 8:Q.28

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.7: 28 residues within 4Å: Chain B: F.42, T.43, G.46, V.47, I.98, A.102, F.106, W.109, E.113, V.126, A.129, F.130, A.133, Y.157, G.158, I.159, H.162, A.246, L.247, A.250 Chain C: Y.210, A.213, L.214, M.218, W.252 Ligands: BCL.6, BCL.10, MQ8.17 17 PLIP interactions: 14 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:T.43, B:V.47, B:I.98, B:F.106, B:A.129, B:F.130, B:F.130, B:F.130, B:F.130, B:A.133, B:Y.157, B:Y.157, B:L.247, B:A.250, C:A.213, C:L.214, C:L.214 BPH.16: 23 residues within 4Å: Chain B: F.190, C.193, L.194, S.197, M.198, V.229 Chain C: S.60, G.64, L.65, S.125, I.126, W.129, T.133, L.146, A.149, F.150, A.153, A.273, V.274, V.277 Chain S: A.26 Ligands: BCL.8, BCL.15 9 PLIP interactions: 1 interactions with chain B, 7 interactions with chain C, 1 interactions with chain S Hydrophobic interactions: B:L.194, C:A.149, C:F.150, C:F.150, C:F.150, C:F.150, C:F.150, C:V.277, S:A.26

1 x UQ8: Ubiquinone-8(Non-covalent)

UQ8.9: 25 residues within 4Å: Chain B: F.128, F.132, F.188, T.191, L.194, M.198, H.199, L.202, I.203, E.221, N.222, F.225, Y.231, S.232, I.233, G.234, A.235, I.238, L.241, F.244, L.247, S.248, F.251, W.252 Chain C: I.7 24 PLIP interactions: 23 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:F.128, B:F.132, B:F.132, B:F.188, B:F.188, B:F.188, B:T.191, B:L.194, B:M.198, B:F.225, B:F.225, B:Y.231, B:I.233, B:I.238, B:I.238, B:L.241, B:F.244, B:F.244, B:L.247, B:L.247, B:F.251, C:I.7 Hydrogen bonds: B:I.233, B:G.234

8 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.11: 13 residues within 4Å: Chain B: T.207, N.208, P.209, Q.210, K.211, G.212, E.213, P.214, V.215 Chain D: T.66, F.67, V.68 Ligands: PEF.25 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:K.211 Hydrogen bonds: B:G.212, B:E.213, D:V.68, D:V.68 PEF.20: 5 residues within 4Å: Chain C: F.36, S.37, Y.38, W.39, I.48 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.37, C:Y.38, C:W.39 PEF.21: 6 residues within 4Å: Chain C: Y.4, Q.5, N.6, I.7, F.8 Ligands: PEF.22 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.5, C:N.6, C:I.7, C:F.8 PEF.22: 7 residues within 4Å: Chain C: F.8, T.9, A.10, W.39, K.42 Chain D: K.204 Ligands: PEF.21 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain C Salt bridges: D:K.204, C:K.42, C:K.42 Hydrophobic interactions: C:F.8 Hydrogen bonds: C:F.8 PEF.23: 12 residues within 4Å: Chain B: F.30 Chain C: R.253, M.256, G.257, F.258 Chain D: R.31, K.35, Y.39, G.57, F.58 Ligands: MQ8.17, PEF.26 11 PLIP interactions: 6 interactions with chain D, 4 interactions with chain C, 1 interactions with chain B Hydrogen bonds: D:R.31, D:Y.39, D:F.58, D:F.58, C:R.253, C:R.253, C:G.257 Salt bridges: D:R.31, D:K.35 Hydrophobic interactions: C:F.258, B:F.30 PEF.25: 9 residues within 4Å: Chain B: N.208, P.209 Chain C: S.143, H.145, R.267 Chain D: Y.29, L.30, E.33 Ligands: PEF.11 10 PLIP interactions: 4 interactions with chain D, 4 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: D:Y.29, D:L.30, D:E.33 Hydrogen bonds: D:Y.29, C:S.143, B:N.208, B:P.209 Salt bridges: C:H.145, C:R.267, C:R.267 PEF.26: 9 residues within 4Å: Chain 8: R.19 Chain B: A.2, G.28 Chain D: P.96, G.97 Chain E: R.18, R.19 Ligands: PEF.23, PEF.33 9 PLIP interactions: 5 interactions with chain E, 3 interactions with chain B, 1 interactions with chain 8 Salt bridges: E:R.18, E:R.18, E:R.19, E:R.19, E:R.19 Hydrogen bonds: B:A.2, B:A.2, B:G.28, 8:R.19 PEF.33: 12 residues within 4Å: Chain D: R.45, V.53 Chain E: I.14, L.15, D.16, R.19 Chain G: D.16, R.18, R.19, V.22 Ligands: PEF.26, BCL.34 9 PLIP interactions: 5 interactions with chain G, 3 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: G:R.18 Hydrogen bonds: G:R.18, G:R.19, G:R.19, D:G.57, E:D.16 Salt bridges: G:R.18, D:R.45, D:R.45

1 x FE: FE (III) ION(Non-covalent)

FE.14: 5 residues within 4Å: Chain B: H.199, H.239 Chain C: H.219, E.234, H.266 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Metal complexes: C:H.219, C:E.234, C:H.266, B:H.199, B:H.239

1 x MQ8: MENAQUINONE 8(Non-covalent)

MQ8.17: 25 residues within 4Å: Chain 8: F.27 Chain B: F.30, L.44, W.109 Chain C: L.214, L.215, M.218, H.219, T.222, A.245, A.248, A.249, W.252, M.256, N.259, V.260, M.262, I.265, W.268 Chain E: A.26, I.29, V.30 Ligands: BPH.7, BCL.10, PEF.23 15 PLIP interactions: 11 interactions with chain C, 3 interactions with chain E, 1 interactions with chain 8 Hydrophobic interactions: C:L.214, C:L.215, C:M.218, C:H.219, C:A.248, C:A.249, C:W.252, C:M.256, C:I.265, C:W.268, E:A.26, E:I.29, E:V.30, 8:F.27 Hydrogen bonds: C:V.260

17 x CRT: SPIRILLOXANTHIN(Non-covalent)

CRT.18: 24 residues within 4Å: Chain C: S.69, I.71, G.72, F.73, F.90, I.106, W.115, L.116, G.119, L.120, T.123, Y.157, G.161, F.162, V.175, F.177, G.178, H.182 Chain O: M.37, I.38, S.41 Chain Q: M.37 Ligands: BCL.8, BCL.15 18 PLIP interactions: 17 interactions with chain C, 1 interactions with chain O Hydrophobic interactions: C:I.71, C:F.90, C:W.115, C:W.115, C:L.116, C:L.120, C:L.120, C:Y.157, C:Y.157, C:F.162, C:F.162, C:F.162, C:V.175, C:V.175, C:F.177, C:F.177, C:F.177, O:M.37 CRT.29: 24 residues within 4Å: Chain 6: K.10, I.11, L.13, I.14 Chain 8: I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain 9: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain E: L.33, H.36, M.37, L.40 Ligands: BCL.27, BCL.92 15 PLIP interactions: 6 interactions with chain 8, 7 interactions with chain 9, 1 interactions with chain E, 1 interactions with chain 6 Hydrophobic interactions: 8:I.24, 8:F.27, 8:F.27, 8:L.31, 8:L.31, 8:L.34, 9:F.18, 9:F.18, 9:I.21, 9:I.21, 9:F.22, 9:F.22, 9:M.26, E:L.33, 6:I.14 CRT.32: 32 residues within 4Å: Chain 8: F.2, T.3, K.10, I.11, L.13, I.14 Chain E: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain F: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain G: L.33, H.36, M.37, L.40, W.46 Ligands: BCL.27, BCL.28, BCL.34 21 PLIP interactions: 4 interactions with chain 8, 6 interactions with chain E, 8 interactions with chain F, 3 interactions with chain G Hydrophobic interactions: 8:T.3, 8:I.11, 8:L.13, 8:I.14, E:L.21, E:L.21, E:F.27, E:L.34, E:I.35, E:I.38, F:E.17, F:F.18, F:F.18, F:I.21, F:F.22, F:M.26, F:W.29, F:F.30, G:H.36, G:L.40, G:W.46 CRT.36: 27 residues within 4Å: Chain E: K.10, I.11, L.13, I.14 Chain G: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain H: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain I: L.33, H.36, M.37 Ligands: BCL.37, BCL.38 23 PLIP interactions: 9 interactions with chain G, 11 interactions with chain H, 1 interactions with chain I, 2 interactions with chain E Hydrophobic interactions: G:L.21, G:I.24, G:F.27, G:F.27, G:L.31, G:L.31, G:L.34, G:I.35, G:I.38, H:L.10, H:E.14, H:F.18, H:F.18, H:I.21, H:I.21, H:F.22, H:M.26, H:W.29, H:F.30, H:F.30, I:H.36, E:K.10, E:I.14 CRT.40: 25 residues within 4Å: Chain G: Y.9, K.10, I.11, I.14 Chain I: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain J: E.14, E.17, F.18, I.21, F.22, M.26, F.30 Chain K: I.29, L.33, H.36, M.37 Ligands: BCL.41, BCL.42 25 PLIP interactions: 1 interactions with chain G, 2 interactions with chain K, 8 interactions with chain I, 14 interactions with chain J Hydrophobic interactions: G:I.14, K:L.33, K:H.36, I:L.21, I:I.24, I:F.27, I:F.27, I:L.31, I:L.31, I:L.34, I:I.35, J:E.17, J:E.17, J:F.18, J:F.18, J:F.18, J:I.21, J:I.21, J:F.22, J:F.22, J:F.22, J:F.22, J:M.26, J:F.30, J:F.30 CRT.45: 23 residues within 4Å: Chain I: K.10, I.11, L.13 Chain K: L.21, I.24, F.27, Q.28, L.31, L.34, I.38 Chain L: E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain M: I.29, L.33, H.36, M.37 Ligands: BCL.43, BCL.46 18 PLIP interactions: 6 interactions with chain K, 1 interactions with chain M, 11 interactions with chain L Hydrophobic interactions: K:L.21, K:I.24, K:F.27, K:F.27, K:L.31, K:L.34, M:H.36, L:E.17, L:F.18, L:F.18, L:I.21, L:I.21, L:F.22, L:F.22, L:F.22, L:M.26, L:F.30, L:F.30 CRT.48: 25 residues within 4Å: Chain K: K.10, I.11, L.13, I.14 Chain M: L.21, I.24, F.27, Q.28, L.31, L.34, I.38 Chain N: E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain O: L.33, H.36, L.40 Ligands: BCL.46, BCL.49, BCL.51 20 PLIP interactions: 10 interactions with chain N, 7 interactions with chain M, 1 interactions with chain O, 2 interactions with chain K Hydrophobic interactions: N:E.17, N:F.18, N:F.18, N:F.18, N:I.21, N:I.21, N:F.22, N:M.26, N:W.29, N:F.30, M:L.21, M:I.24, M:F.27, M:F.27, M:L.31, M:L.34, M:I.38, O:L.40, K:K.10, K:I.14 CRT.53: 25 residues within 4Å: Chain M: K.10, I.11, I.14 Chain O: L.21, I.24, F.27, Q.28, L.31, I.35, I.38 Chain P: E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain Q: G.32, L.33, H.36, M.37 Ligands: BCL.52, BCL.54 18 PLIP interactions: 9 interactions with chain P, 7 interactions with chain O, 2 interactions with chain M Hydrophobic interactions: P:F.18, P:I.21, P:I.21, P:F.22, P:F.22, P:M.26, P:W.29, P:F.30, O:L.21, O:I.24, O:F.27, O:F.27, O:L.31, O:L.31, O:I.35, M:I.11, M:I.14 Hydrogen bonds: P:E.17 CRT.57: 21 residues within 4Å: Chain O: L.8, K.10, I.11, I.14 Chain Q: L.21, I.24, F.27, Q.28, L.31, L.34 Chain R: E.17, F.18, I.21, F.22, S.25, M.26 Chain S: L.33, H.36, M.37 Ligands: BCL.55, BCL.61 16 PLIP interactions: 9 interactions with chain R, 6 interactions with chain Q, 1 interactions with chain O Hydrophobic interactions: R:E.17, R:F.18, R:F.18, R:I.21, R:I.21, R:I.21, R:F.22, R:F.22, R:M.26, Q:L.21, Q:I.24, Q:I.24, Q:F.27, Q:L.31, Q:L.34, O:L.8 CRT.62: 23 residues within 4Å: Chain Q: L.8, I.11, I.14 Chain S: L.21, I.24, F.27, Q.28, L.31, L.34, I.35 Chain T: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain U: L.33, H.36, M.37 Ligands: BCL.59, BCL.61, BCL.65 20 PLIP interactions: 10 interactions with chain S, 7 interactions with chain T, 3 interactions with chain Q Hydrophobic interactions: S:L.21, S:I.24, S:I.24, S:F.27, S:F.27, S:Q.28, S:L.31, S:L.31, S:L.34, S:I.35, T:F.18, T:I.21, T:I.21, T:I.21, T:F.22, T:F.22, T:M.26, Q:L.8, Q:I.11, Q:I.14 CRT.66: 25 residues within 4Å: Chain C: F.84 Chain S: K.10, I.11, I.14 Chain U: L.21, I.24, F.27, L.31, L.34, I.35, I.38 Chain V: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain W: I.29, L.33, H.36 Ligands: BCL.63, BCL.65, BCL.67 21 PLIP interactions: 8 interactions with chain U, 2 interactions with chain W, 9 interactions with chain V, 2 interactions with chain S Hydrophobic interactions: U:L.21, U:I.24, U:F.27, U:F.27, U:L.31, U:L.31, U:L.34, U:I.35, W:L.33, W:H.36, V:F.18, V:I.21, V:I.21, V:F.22, V:F.22, V:F.22, V:F.22, V:M.26, V:F.30, S:I.14, S:I.14 CRT.70: 28 residues within 4Å: Chain U: L.8, K.10, I.11, I.14 Chain W: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain X: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain Y: L.33, H.36, M.37 Ligands: BCL.67, BCL.68, BCL.71 26 PLIP interactions: 13 interactions with chain X, 8 interactions with chain W, 4 interactions with chain U, 1 interactions with chain Y Hydrophobic interactions: X:E.14, X:E.17, X:E.17, X:F.18, X:F.18, X:F.18, X:I.21, X:I.21, X:F.22, X:F.22, X:M.26, X:F.30, X:F.30, W:L.21, W:L.21, W:I.24, W:F.27, W:L.31, W:L.31, W:L.34, W:I.35, U:L.8, U:I.11, U:I.11, U:I.14, Y:L.33 CRT.73: 23 residues within 4Å: Chain 0: I.29, L.33, H.36, L.40 Chain W: K.10, I.11, I.14 Chain Y: L.21, I.24, F.27, L.31, L.34, I.35, I.38 Chain Z: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30 Ligands: BCL.75 19 PLIP interactions: 8 interactions with chain Y, 7 interactions with chain Z, 2 interactions with chain W, 2 interactions with chain 0 Hydrophobic interactions: Y:L.21, Y:I.24, Y:F.27, Y:F.27, Y:L.31, Y:L.34, Y:I.35, Y:I.38, Z:F.18, Z:F.18, Z:I.21, Z:I.21, Z:F.22, Z:M.26, Z:F.30, W:K.10, W:I.14, 0:I.29, 0:L.33 CRT.77: 24 residues within 4Å: Chain 0: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain 1: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain 2: I.29, L.33, H.36, M.37 Chain Y: K.10, I.11, I.14 Ligands: BCL.78, BCL.79 18 PLIP interactions: 2 interactions with chain 2, 7 interactions with chain 1, 7 interactions with chain 0, 2 interactions with chain Y Hydrophobic interactions: 2:I.29, 2:L.33, 1:E.17, 1:F.18, 1:F.18, 1:F.18, 1:I.21, 1:I.21, 1:M.26, 0:L.21, 0:I.24, 0:F.27, 0:F.27, 0:L.31, 0:L.34, 0:I.35, Y:K.10, Y:I.14 CRT.81: 26 residues within 4Å: Chain 0: L.8, K.10, I.11, I.14 Chain 2: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain 3: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain 4: I.29, G.32, L.33, H.36 Ligands: BCL.79, BCL.82, BCL.83 18 PLIP interactions: 10 interactions with chain 2, 5 interactions with chain 3, 2 interactions with chain 0, 1 interactions with chain 4 Hydrophobic interactions: 2:L.21, 2:I.24, 2:I.24, 2:F.27, 2:F.27, 2:L.31, 2:L.34, 2:I.35, 2:I.35, 2:I.38, 3:E.14, 3:F.18, 3:I.21, 3:I.21, 3:M.26, 0:L.8, 0:I.14, 4:L.33 CRT.85: 24 residues within 4Å: Chain 2: L.8, K.10, I.11, L.13, I.14 Chain 4: I.24, F.27, L.31, L.34, I.35, I.38 Chain 5: E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain 6: I.29, L.33, H.36, M.37 Ligands: BCL.86, BCL.87 16 PLIP interactions: 7 interactions with chain 5, 2 interactions with chain 2, 6 interactions with chain 4, 1 interactions with chain 6 Hydrophobic interactions: 5:F.18, 5:F.18, 5:I.21, 5:I.21, 5:I.21, 5:M.26, 5:F.30, 2:L.8, 2:I.14, 4:I.24, 4:F.27, 4:F.27, 4:L.31, 4:L.34, 4:I.35, 6:I.29 CRT.89: 22 residues within 4Å: Chain 4: K.10, I.11, I.14 Chain 6: L.21, I.24, F.27, L.31, I.35, I.38 Chain 7: E.17, F.18, I.21, F.22, S.25, M.26, W.29 Chain 8: I.29, L.33, H.36, M.37 Ligands: BCL.90, BCL.91 24 PLIP interactions: 8 interactions with chain 6, 11 interactions with chain 7, 4 interactions with chain 4, 1 interactions with chain 8 Hydrophobic interactions: 6:L.21, 6:L.21, 6:I.24, 6:F.27, 6:F.27, 6:L.31, 6:L.31, 6:I.35, 7:E.17, 7:F.18, 7:F.18, 7:F.18, 7:I.21, 7:I.21, 7:F.22, 7:F.22, 7:F.22, 7:M.26, 7:W.29, 4:K.10, 4:K.10, 4:I.11, 4:I.14, 8:H.36

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.19: 8 residues within 4Å: Chain C: L.28, Y.52, G.54, L.55, T.56, K.135, R.136 Chain O: R.19 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain O Hydrogen bonds: C:L.55, C:T.56, C:R.136 Salt bridges: O:R.19 PO4.24: 5 residues within 4Å: Chain B: W.71 Chain C: H.301 Chain D: Y.8, Q.13, W.17 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: D:Y.8, D:Q.13, B:W.71 Salt bridges: C:H.301

1 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)

PGW.58: 5 residues within 4Å: Chain C: G.32, R.33, I.35 Chain S: R.18, R.19 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain S Hydrophobic interactions: C:I.35 Hydrogen bonds: S:R.18, S:R.18, S:R.19 Salt bridges: S:R.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, L.J. et al., Structural Basis for the Unusual Qy Red-Shift and Enhanced Thermostability of the LH1 Complex from Thermochromatium tepidum. Biochemistry (2016)

Release Date

2017-03-22

Peptides

Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center L subunit: B
Photosynthetic reaction center M subunit: C
Photosynthetic reaction center H subunit: D
LH1 alpha polypeptide: EGIKMOQSUWY02468
LH1 beta polypeptide: FHJLNPRTVXZ13579

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
o

B
x

C
y

D
t

E
m

G
p

I
r

K
u

M
w

O
AA

Q
AC

S
AE

U
AG

W
AI

Y
AK

0
d

2
f

4
h

6
j

8
l

F
n

H
q

J
s

L
v

N
z

P
AB

R
AD

T
AF

V
AH

X
AJ

Z
AL

1
e

3
g

5
i

7
k

9
c

Membrane

We predict this structure to be a membrane protein.
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Photosynthetic reaction center cytochrome c subunit

Photosynthetic reaction center L subunit

Photosynthetic reaction center M subunit

Photosynthetic reaction center H subunit

LH1 alpha polypeptide

LH1 beta polypeptide

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