Due to a high load of modelling projects, the rate of submission via the website has been reduced.
For a much higher submission rate, please use the Modelling API.

SMTL ID : 5b5m.1 (1 other biounit)

Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.30 Å
Oligo State
hetero-1-1-1-1-16-16-mer
Ligands
4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
19 x SR: STRONTIUM ION(Non-functional Binders)
36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
1 x UQ8: Ubiquinone-8(Non-covalent)
8 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)
1 x FE: FE (III) ION(Non-covalent)
1 x MQ8: MENAQUINONE 8(Non-covalent)
17 x CRT: SPIRILLOXANTHIN(Non-covalent)
2 x PO4: PHOSPHATE ION(Non-functional Binders)
1 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yu, L.J. et al., Structural Basis for the Unusual Qy Red-Shift and Enhanced Thermostability of the LH1 Complex from Thermochromatium tepidum. Biochemistry (2016)
Release Date
2017-03-22
Peptides
Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center L subunit: B
Photosynthetic reaction center M subunit: C
Photosynthetic reaction center H subunit: D
LH1 alpha polypeptide: EGIKMOQSUWY02468
LH1 beta polypeptide: FHJLNPRTVXZ13579
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
L
C
M
D
H
E
A
G
D
I
F
K
I
M
K
O
O
Q
Q
S
S
U
U
W
W
Y
Y
0
1
2
3
4
5
6
7
8
9
F
B
H
E
J
G
L
J
N
N
P
P
R
R
T
T
V
V
X
X
Z
Z
1
2
3
4
5
6
7
8
9
0
Membrane
We predict this structure to be a membrane protein.

Photosynthetic reaction center cytochrome c subunit

Photosynthetic reaction center L subunit

Photosynthetic reaction center M subunit

Photosynthetic reaction center H subunit

LH1 alpha polypeptide

Toggle Identical (EGIKMOQSUWY02468)

LH1 beta polypeptide

Toggle Identical (FHJLNPRTVXZ13579)

Related Entries With Identical Sequence

3wmm.1 | 4v8k.1 | 4v8k.2 | 5b5m.2 | 5b5n.1 | 5b5n.2 | 5y5s.1 | 7c52.1