SMTL ID : 4v8k.1 (1 other biounit)

Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-1-1-1-1-16-16-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.1: 21 residues within 4Å: Chain A: Y.76, Q.77, N.78, V.79, Q.80, V.81, L.82, F.90, M.94, V.97, T.98, C.107, C.110, H.111, W.116, A.117, K.124, S.127, R.128, F.131 Ligands: HEM.2 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:Y.76, A:Y.76, A:V.79, A:V.79, A:M.94, A:V.97, A:W.116, A:W.116, A:K.124, A:F.131 Hydrogen bonds: A:Q.77, A:N.78, A:Q.80, A:V.81, A:L.82 Salt bridges: A:R.128 pi-Stacking: A:F.90, A:H.111, A:H.111 pi-Cation interactions: A:H.111 Metal complexes: A:H.111 HEM.2: 23 residues within 4Å: Chain A: V.97, V.101, Y.109, Y.122, T.123, V.126, S.127, M.130, V.134, V.150, T.151, C.152, C.155, H.156, V.161, P.162, I.284, L.291, R.295, L.303, R.304, V.305 Ligands: HEM.1 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:V.97, A:V.101, A:Y.109, A:V.126, A:M.130, A:V.134, A:V.150, A:V.161, A:P.162, A:I.284, A:V.305 Hydrogen bonds: A:Y.109, A:Y.122 Salt bridges: A:R.295, A:R.295 pi-Stacking: A:H.156, A:H.156, A:H.156 pi-Cation interactions: A:H.156 Metal complexes: A:H.156 HEM.3: 26 residues within 4Å: Chain A: I.210, R.211, I.212, T.213, T.232, F.233, M.236, M.237, I.239, S.240, L.243, V.245, C.247, C.250, H.251, F.256, N.257, W.259, R.266, A.269, W.270, I.273, R.274 Chain B: L.174 Chain C: I.191 Ligands: HEM.4 16 PLIP interactions: 14 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: A:T.232, A:F.233, A:M.236, A:I.239, A:L.243, A:V.245, A:W.259, A:R.266, C:I.191, B:L.174 Hydrogen bonds: A:I.212, A:T.213 Salt bridges: A:R.274 pi-Stacking: A:H.251, A:H.251 Metal complexes: A:H.251 HEM.4: 19 residues within 4Å: Chain A: H.144, V.145, T.148, L.204, I.239, K.265, T.268, A.269, A.272, I.273, V.305, S.306, C.307, C.310, H.311, N.315, K.316, P.317 Ligands: HEM.3 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:L.204, A:I.239, A:T.268, A:A.272, A:V.305, A:K.316, A:P.317 Hydrogen bonds: A:T.148, A:T.148 Salt bridges: A:K.265, A:K.316, A:K.316 pi-Stacking: A:H.144, A:H.144, A:H.311, A:H.311 Metal complexes: A:H.144, A:H.311

17 x CA: CALCIUM ION(Non-covalent)

CA.5: 3 residues within 4Å: Chain A: Q.183, E.230 Chain C: E.96 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:E.96, C:E.96, A:E.230, H2O.1 CA.24: 7 residues within 4Å: Chain 9: L.47 Chain E: N.45, W.46, L.47, D.49, N.50 Chain F: R.44 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain 9 Metal complexes: E:W.46, E:D.49, 9:L.47 CA.27: 8 residues within 4Å: Chain F: L.47 Chain G: W.46, L.47, D.48, D.49, N.50, I.51 Chain H: R.44 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain F Metal complexes: G:W.46, G:D.49, F:L.47 CA.30: 6 residues within 4Å: Chain H: L.47 Chain I: N.45, W.46, D.49, N.50 Chain J: R.44 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain I Metal complexes: H:L.47, I:W.46, I:D.49 CA.34: 5 residues within 4Å: Chain J: L.47 Chain K: W.46, D.49, N.50 Chain L: R.44 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain J Metal complexes: K:W.46, K:D.49, J:L.47 CA.38: 6 residues within 4Å: Chain L: L.47 Chain M: W.46, D.49, N.50, I.51 Chain N: R.44 4 PLIP interactions: 1 interactions with chain L, 3 interactions with chain M Metal complexes: L:L.47, M:W.46, M:D.49, M:N.50 CA.42: 6 residues within 4Å: Chain N: L.47 Chain O: W.46, L.47, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain O, 1 interactions with chain N Metal complexes: O:W.46, O:L.47, O:D.49, N:L.47 CA.46: 6 residues within 4Å: Chain P: L.47 Chain Q: N.45, W.46, L.47, D.49, N.50 3 PLIP interactions: 2 interactions with chain Q, 1 interactions with chain P Metal complexes: Q:W.46, Q:D.49, P:L.47 CA.51: 5 residues within 4Å: Chain R: L.47 Chain S: W.46, D.49, N.50, I.51 3 PLIP interactions: 1 interactions with chain R, 2 interactions with chain S Metal complexes: R:L.47, S:W.46, S:D.49 CA.56: 5 residues within 4Å: Chain T: L.47 Chain U: W.46, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain U, 1 interactions with chain T Metal complexes: U:W.46, U:D.49, U:N.50, T:L.47 CA.58: 5 residues within 4Å: Chain V: L.47 Chain W: W.46, D.49, N.50, I.51 3 PLIP interactions: 2 interactions with chain W, 1 interactions with chain V Metal complexes: W:W.46, W:D.49, V:L.47 CA.64: 7 residues within 4Å: Chain X: L.47 Chain Y: W.46, L.47, D.49, N.50, I.51 Chain Z: R.44 4 PLIP interactions: 3 interactions with chain Y, 1 interactions with chain X Metal complexes: Y:W.46, Y:D.49, Y:I.51, X:L.47 CA.67: 6 residues within 4Å: Chain 0: W.46, D.49, N.50, I.51 Chain 1: R.44 Chain Z: L.47 2 PLIP interactions: 1 interactions with chain Z, 1 interactions with chain 0 Metal complexes: Z:L.47, 0:D.49 CA.73: 5 residues within 4Å: Chain 1: L.47 Chain 2: W.46, D.49, N.50 Chain 3: R.44 3 PLIP interactions: 2 interactions with chain 2, 1 interactions with chain 1 Metal complexes: 2:W.46, 2:D.49, 1:L.47 CA.76: 5 residues within 4Å: Chain 3: L.47 Chain 4: W.46, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain 4, 1 interactions with chain 3 Metal complexes: 4:W.46, 4:D.49, 4:I.51, 3:L.47 CA.80: 7 residues within 4Å: Chain 5: W.46, L.47 Chain 6: W.46, L.47, D.49, N.50, I.51 4 PLIP interactions: 3 interactions with chain 6, 1 interactions with chain 5 Metal complexes: 6:W.46, 6:D.49, 6:I.51, 5:L.47 CA.84: 5 residues within 4Å: Chain 7: L.47 Chain 8: W.46, D.49, N.50, I.51 3 PLIP interactions: 2 interactions with chain 8, 1 interactions with chain 7 Metal complexes: 8:W.46, 8:D.49, 7:L.47

36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.6: 23 residues within 4Å: Chain B: F.106, A.133, Y.137, L.140, V.166, S.167, G.170, F.176, H.177, H.182, A.185, I.186, F.189, S.253, A.254, C.256, I.257 Chain C: T.186, Y.197 Ligands: BPH.7, BCL.9, BCL.10, BCL.11 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:F.106, B:F.106, B:F.106, B:A.133, B:Y.137, B:L.140, B:V.166, B:V.166, B:V.166, B:F.176, B:A.185, B:I.186, B:F.189, B:I.257 Metal complexes: B:H.182 BCL.9: 17 residues within 4Å: Chain B: V.47, Y.137, L.140, F.155, I.159, H.162, L.163 Chain C: M.203, I.206, A.207, Y.210, G.211, L.214 Ligands: BCL.6, BPH.7, BCL.11, MQ8.14 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain B, Hydrophobic interactions: C:I.206, C:I.206, C:A.207, C:L.214, B:V.47, B:Y.137, B:L.140 Water bridges: C:H.202 pi-Stacking: C:Y.210, C:Y.210 Metal complexes: B:H.162 BCL.10: 16 residues within 4Å: Chain B: H.182, M.183, I.186, S.187, F.190, T.191 Chain C: F.156, L.160, V.175, H.182, L.183 Ligands: BCL.6, UQ8.8, BCL.11, BPH.12, CRT.15 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain B, Hydrophobic interactions: C:F.156, C:L.160, C:V.175, B:I.186, B:I.186, B:T.191 Metal complexes: C:H.182 pi-Stacking: B:F.190 BCL.11: 27 residues within 4Å: Chain B: H.177, F.190 Chain C: L.122, I.126, A.153, I.154, F.156, F.177, T.186, A.187, F.189, S.190, L.196, Y.197, N.199, H.202, S.205, I.206, L.209, Y.210, A.280, I.284 Ligands: BCL.6, BCL.9, BCL.10, BPH.12, CRT.15 18 PLIP interactions: 17 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:L.122, C:I.126, C:I.126, C:A.153, C:F.156, C:F.156, C:F.177, C:F.189, C:L.196, C:Y.197, C:I.206, C:Y.210, C:I.284, B:F.190 Hydrogen bonds: C:Y.197, C:S.205 Salt bridges: C:H.202 Metal complexes: C:H.202 BCL.22: 18 residues within 4Å: Chain 8: I.11, W.12, L.15, I.35 Chain E: Q.28, I.29, G.32, H.36, W.46 Chain F: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.25, CRT.26, CRT.86, BCL.87 12 PLIP interactions: 5 interactions with chain E, 3 interactions with chain 8, 4 interactions with chain F, Hydrophobic interactions: E:Q.28, E:I.29, E:W.46, E:W.46, 8:W.12, 8:L.15, 8:I.35, F:W.29, F:W.29, F:W.29, F:A.36 Metal complexes: E:H.36 BCL.25: 17 residues within 4Å: Chain E: Q.28, L.31, G.32, I.35, H.36, V.39, D.43 Chain F: W.29, F.30, V.33, H.37, W.46 Chain G: L.47 Chain H: L.39 Ligands: BCL.22, CRT.26, BCL.28 9 PLIP interactions: 4 interactions with chain E, 1 interactions with chain H, 1 interactions with chain G, 3 interactions with chain F, Hydrophobic interactions: E:I.35, E:V.39, H:L.39, G:L.47, F:F.30, F:V.33 Hydrogen bonds: E:Q.28 pi-Stacking: E:H.36 Metal complexes: F:H.37 BCL.28: 19 residues within 4Å: Chain E: W.12, V.20 Chain F: M.26 Chain G: V.25, Q.28, I.29, G.32, H.36, V.39, W.46, L.47 Chain H: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.25, CRT.26, BCL.29 13 PLIP interactions: 7 interactions with chain G, 2 interactions with chain E, 4 interactions with chain H, Hydrophobic interactions: G:Q.28, G:I.29, G:V.39, G:W.46, G:W.46, G:L.47, E:W.12, E:V.20, H:W.29, H:W.29, H:W.29, H:A.36 Metal complexes: G:H.36 BCL.29: 14 residues within 4Å: Chain G: Q.28, L.31, G.32, I.35, H.36 Chain H: W.29, F.30, V.33, H.37, A.40, W.46 Ligands: CRT.23, BCL.28, BCL.31 10 PLIP interactions: 2 interactions with chain G, 8 interactions with chain H, Hydrophobic interactions: G:I.35, H:F.30, H:F.30, H:V.33, H:A.40, H:W.46, H:W.46 Hydrogen bonds: G:Q.28 pi-Stacking: H:H.37 Metal complexes: H:H.37 BCL.31: 17 residues within 4Å: Chain G: W.12 Chain H: F.22 Chain I: V.25, Q.28, G.32, H.36, W.46 Chain J: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: CRT.23, BCL.29, BCL.32, CRT.33 12 PLIP interactions: 1 interactions with chain G, 5 interactions with chain J, 5 interactions with chain I, 1 interactions with chain H, Hydrophobic interactions: G:W.12, J:W.29, J:W.29, J:W.29, J:A.36, J:A.40, I:Q.28, I:W.46, I:W.46, I:W.46, H:F.22 Metal complexes: I:H.36 BCL.32: 16 residues within 4Å: Chain I: F.27, Q.28, L.31, G.32, I.35, H.36 Chain J: W.29, F.30, V.33, H.37, W.41, W.46 Chain K: L.47 Ligands: BCL.31, CRT.33, BCL.35 8 PLIP interactions: 7 interactions with chain J, 1 interactions with chain K, Hydrophobic interactions: J:F.30, J:V.33, J:H.37, J:W.46, J:W.46, J:W.46, K:L.47 Metal complexes: J:H.37 BCL.35: 19 residues within 4Å: Chain I: V.20, I.24 Chain K: V.25, Q.28, I.29, G.32, H.36, V.39, W.46, L.47 Chain L: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.32, CRT.33, BCL.36, CRT.37 13 PLIP interactions: 3 interactions with chain L, 3 interactions with chain I, 7 interactions with chain K, Hydrophobic interactions: L:W.29, L:W.29, L:A.36, I:V.20, I:I.24, I:I.24, K:Q.28, K:I.29, K:V.39, K:W.46, K:W.46, K:W.46 Metal complexes: K:H.36 BCL.36: 17 residues within 4Å: Chain K: Q.28, L.31, G.32, I.35, H.36, V.39, D.43 Chain L: W.29, F.30, V.33, H.37, A.40, W.46 Chain N: L.32 Ligands: BCL.35, CRT.37, BCL.39 10 PLIP interactions: 4 interactions with chain K, 5 interactions with chain L, 1 interactions with chain N, Hydrophobic interactions: K:L.31, K:I.35, K:V.39, L:V.33, L:A.40, L:W.46, L:W.46, N:L.32 Hydrogen bonds: K:Q.28 Metal complexes: L:H.37 BCL.39: 20 residues within 4Å: Chain K: I.11 Chain L: F.22, M.26 Chain M: V.25, Q.28, I.29, G.32, H.36, V.39, W.46 Chain N: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: BCL.36, CRT.37, BCL.40, CRT.41 15 PLIP interactions: 5 interactions with chain N, 1 interactions with chain K, 7 interactions with chain M, 2 interactions with chain L, Hydrophobic interactions: N:W.29, N:W.29, N:W.29, N:A.36, N:A.40, K:I.11, M:I.29, M:V.39, M:W.46, M:W.46, M:W.46, M:W.46, L:F.22, L:F.22 Metal complexes: M:H.36 BCL.40: 15 residues within 4Å: Chain M: Q.28, L.31, G.32, I.35, H.36 Chain N: W.29, F.30, V.33, H.37, L.38, W.41, W.46 Ligands: BCL.39, CRT.41, BCL.43 10 PLIP interactions: 8 interactions with chain N, 2 interactions with chain M, Hydrophobic interactions: N:F.30, N:H.37, N:W.41, N:W.46, N:W.46, N:W.46, N:W.46, M:L.31 Metal complexes: N:H.37 Hydrogen bonds: M:Q.28 BCL.43: 19 residues within 4Å: Chain M: L.15, V.20, S.23, I.24 Chain O: V.25, Q.28, I.29, G.32, H.36, V.39, W.46 Chain P: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.40, CRT.41, BCL.44 13 PLIP interactions: 9 interactions with chain O, 1 interactions with chain M, 3 interactions with chain P, Hydrophobic interactions: O:Q.28, O:I.29, O:V.39, O:W.46, O:W.46, O:W.46, O:W.46, M:I.24, P:W.29, P:W.29, P:A.36 Hydrogen bonds: O:G.32 Metal complexes: O:H.36 BCL.44: 14 residues within 4Å: Chain O: Q.28, L.31, G.32, I.35, H.36 Chain P: W.29, F.30, V.33, H.37, W.46 Chain Q: L.47 Ligands: BCL.43, CRT.45, BCL.47 9 PLIP interactions: 7 interactions with chain P, 1 interactions with chain Q, 1 interactions with chain O, Hydrophobic interactions: P:F.30, P:F.30, P:V.33, P:W.46, P:W.46, P:W.46, Q:L.47, O:I.35 Metal complexes: P:H.37 BCL.47: 17 residues within 4Å: Chain O: I.11, I.24 Chain Q: Q.28, I.29, G.32, H.36, W.46, L.47 Chain R: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.44, CRT.45, BCL.48, CRT.49 9 PLIP interactions: 5 interactions with chain R, 2 interactions with chain Q, 2 interactions with chain O, Hydrophobic interactions: R:W.29, R:W.29, R:W.29, R:L.32, R:A.36, Q:W.46, O:I.11, O:I.24 Metal complexes: Q:H.36 BCL.48: 16 residues within 4Å: Chain Q: Q.28, L.31, G.32, I.35, H.36 Chain R: W.29, F.30, V.33, V.34, H.37, L.38, W.46 Chain S: L.47 Ligands: BCL.47, CRT.49, BCL.52 11 PLIP interactions: 8 interactions with chain R, 2 interactions with chain Q, 1 interactions with chain S, Hydrophobic interactions: R:F.30, R:V.33, R:V.34, R:L.38, R:W.46, R:W.46, R:W.46, Q:L.31, Q:I.35, S:L.47 Metal complexes: R:H.37 BCL.52: 20 residues within 4Å: Chain Q: I.24, I.35, V.39 Chain R: M.26 Chain S: V.25, Q.28, I.29, G.32, H.36, W.46 Chain T: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: BCL.48, CRT.49, BCL.54, CRT.55 11 PLIP interactions: 3 interactions with chain T, 2 interactions with chain Q, 6 interactions with chain S, Hydrophobic interactions: T:W.29, T:A.36, T:A.40, Q:I.35, Q:V.39, S:Q.28, S:I.29, S:W.46, S:W.46 pi-Stacking: S:W.46 Metal complexes: S:H.36 BCL.54: 18 residues within 4Å: Chain S: Q.28, L.31, G.32, I.35, H.36, L.44 Chain T: W.29, F.30, V.33, H.37, W.46, L.47 Chain U: L.47 Chain V: L.39, Y.43 Ligands: BCL.52, CRT.55, BCL.57 10 PLIP interactions: 1 interactions with chain S, 6 interactions with chain T, 1 interactions with chain U, 2 interactions with chain V, Hydrophobic interactions: S:L.44, T:F.30, T:W.46, T:W.46, T:W.46, T:L.47, U:L.47, V:L.39, V:Y.43 Metal complexes: T:H.37 BCL.57: 19 residues within 4Å: Chain S: L.15, V.20, I.24 Chain U: V.25, Q.28, I.29, G.32, H.36, W.46 Chain V: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: CRT.53, BCL.54, CRT.55, BCL.59 12 PLIP interactions: 5 interactions with chain U, 4 interactions with chain S, 3 interactions with chain V, Hydrophobic interactions: U:V.25, U:Q.28, U:I.29, U:W.46, S:L.15, S:V.20, S:I.24, S:I.24, V:W.29, V:A.36, V:A.40 Metal complexes: U:H.36 BCL.59: 16 residues within 4Å: Chain U: Q.28, L.31, G.32, I.35, H.36 Chain V: W.29, F.30, V.33, H.37, W.46 Chain X: A.36, L.39, A.40, Y.43 Ligands: BCL.57, BCL.60 11 PLIP interactions: 3 interactions with chain X, 6 interactions with chain V, 2 interactions with chain U, Hydrophobic interactions: X:L.39, X:A.40, X:Y.43, V:F.30, V:V.33, V:W.46, V:W.46, V:W.46, U:I.35 Metal complexes: V:H.37 Hydrogen bonds: U:Q.28 BCL.60: 19 residues within 4Å: Chain U: L.15, V.20 Chain V: F.22 Chain W: L.21, V.25, Q.28, I.29, H.36, W.46 Chain X: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: CRT.53, BCL.59, BCL.62, CRT.63 10 PLIP interactions: 2 interactions with chain X, 5 interactions with chain W, 2 interactions with chain U, 1 interactions with chain V, Hydrophobic interactions: X:W.29, X:A.36, W:L.21, W:Q.28, W:W.46, W:W.46, U:L.15, U:V.20, V:F.22 Metal complexes: W:H.36 BCL.62: 14 residues within 4Å: Chain W: Q.28, L.31, G.32, I.35, H.36 Chain X: W.29, F.30, V.33, H.37, W.46 Chain Y: L.47 Ligands: BCL.60, CRT.63, BCL.65 11 PLIP interactions: 3 interactions with chain W, 1 interactions with chain Y, 7 interactions with chain X, Hydrophobic interactions: W:L.31, W:I.35, Y:L.47, X:F.30, X:V.33, X:W.46, X:W.46, X:W.46 Hydrogen bonds: W:Q.28 pi-Cation interactions: X:H.37 Metal complexes: X:H.37 BCL.65: 20 residues within 4Å: Chain W: I.11, L.15, I.35 Chain X: F.22 Chain Y: V.25, Q.28, I.29, G.32, H.36, V.39, W.46 Chain Z: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.61, BCL.62, CRT.63, BCL.66 17 PLIP interactions: 9 interactions with chain Y, 4 interactions with chain W, 1 interactions with chain X, 3 interactions with chain Z, Hydrophobic interactions: Y:V.25, Y:Q.28, Y:Q.28, Y:I.29, Y:V.39, Y:W.46, Y:W.46, Y:W.46, W:I.11, W:I.11, W:L.15, W:I.35, X:F.22, Z:W.29, Z:W.29, Z:W.29 Metal complexes: Y:H.36 BCL.66: 16 residues within 4Å: Chain 0: L.47 Chain 1: I.35, L.39 Chain Y: Q.28, L.31, G.32, I.35, H.36, V.39 Chain Z: W.29, F.30, V.33, H.37, W.46 Ligands: BCL.65, BCL.68 11 PLIP interactions: 6 interactions with chain Z, 2 interactions with chain Y, 2 interactions with chain 1, 1 interactions with chain 0, Hydrophobic interactions: Z:V.33, Z:W.46, Z:W.46, Y:L.31, Y:V.39, 1:I.35, 1:L.39, 0:L.47 pi-Stacking: Z:W.46, Z:W.46 Metal complexes: Z:H.37 BCL.68: 21 residues within 4Å: Chain 0: L.21, V.25, Q.28, I.29, G.32, H.36, V.39, W.46 Chain 1: S.25, W.29, L.32, V.33, A.36, H.37 Chain Y: I.11, W.12 Chain Z: F.22 Ligands: CRT.61, BCL.66, BCL.70, CRT.71 16 PLIP interactions: 1 interactions with chain Z, 9 interactions with chain 0, 2 interactions with chain Y, 4 interactions with chain 1, Hydrophobic interactions: Z:F.22, 0:L.21, 0:Q.28, 0:Q.28, 0:V.39, 0:W.46, 0:W.46, 0:W.46, 0:W.46, Y:I.11, Y:W.12, 1:W.29, 1:W.29, 1:W.29, 1:A.36 Metal complexes: 0:H.36 BCL.70: 14 residues within 4Å: Chain 0: Q.28, L.31, G.32, I.35, H.36 Chain 1: W.29, F.30, V.33, H.37, W.46 Chain 3: I.35 Ligands: BCL.68, CRT.71, BCL.74 10 PLIP interactions: 2 interactions with chain 0, 7 interactions with chain 1, 1 interactions with chain 3, Hydrophobic interactions: 0:I.35, 1:F.30, 1:V.33, 1:W.46, 1:W.46, 1:W.46, 1:W.46, 3:I.35 Hydrogen bonds: 0:Q.28 Metal complexes: 1:H.37 BCL.74: 19 residues within 4Å: Chain 0: I.11 Chain 1: F.22, M.26 Chain 2: V.25, Q.28, I.29, G.32, H.36, L.44, W.46 Chain 3: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.69, BCL.70, CRT.71, BCL.75 11 PLIP interactions: 7 interactions with chain 2, 3 interactions with chain 3, 1 interactions with chain 1, Hydrophobic interactions: 2:V.25, 2:Q.28, 2:L.44, 2:W.46, 2:W.46, 2:W.46, 3:W.29, 3:W.29, 3:A.36, 1:F.22 Metal complexes: 2:H.36 BCL.75: 14 residues within 4Å: Chain 2: Q.28, L.31, G.32, I.35, H.36, L.44 Chain 3: W.29, F.30, V.33, H.37, W.46 Ligands: CRT.69, BCL.74, BCL.77 13 PLIP interactions: 5 interactions with chain 2, 8 interactions with chain 3, Hydrophobic interactions: 2:L.31, 2:I.35, 2:L.44, 3:F.30, 3:F.30, 3:F.30, 3:V.33, 3:W.46, 3:W.46, 3:W.46 Hydrogen bonds: 2:Q.28 pi-Stacking: 2:H.36 Metal complexes: 3:H.37 BCL.77: 20 residues within 4Å: Chain 2: I.11, L.15, V.20, I.24 Chain 4: L.21, V.25, Q.28, I.29, G.32, H.36, W.46 Chain 5: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.69, BCL.75, BCL.79, CRT.81 15 PLIP interactions: 4 interactions with chain 2, 8 interactions with chain 4, 3 interactions with chain 5, Hydrophobic interactions: 2:I.11, 2:L.15, 2:V.20, 2:I.24, 4:L.21, 4:V.25, 4:V.25, 4:Q.28, 4:W.46, 4:W.46, 4:W.46, 5:W.29, 5:W.29, 5:A.36 Metal complexes: 4:H.36 BCL.79: 15 residues within 4Å: Chain 4: Q.28, L.31, G.32, I.35, H.36, V.39 Chain 5: W.29, F.30, V.33, H.37, W.46 Chain 6: L.47 Ligands: BCL.77, CRT.81, BCL.82 6 PLIP interactions: 4 interactions with chain 5, 1 interactions with chain 4, 1 interactions with chain 6, Hydrophobic interactions: 5:F.30, 5:F.30, 5:V.33, 4:V.39, 6:L.47 Metal complexes: 5:H.37 BCL.82: 18 residues within 4Å: Chain 4: M.4, I.11, V.20, I.24 Chain 6: V.25, Q.28, I.29, H.36, V.39, W.46 Chain 7: W.29, V.33, A.36, H.37 Ligands: CRT.78, BCL.79, CRT.81, BCL.83 15 PLIP interactions: 4 interactions with chain 4, 8 interactions with chain 6, 3 interactions with chain 7, Hydrophobic interactions: 4:I.11, 4:V.20, 4:I.24, 4:I.24, 6:V.25, 6:V.25, 6:I.29, 6:I.29, 6:V.39, 6:W.46, 6:W.46, 7:W.29, 7:W.29, 7:A.36 Metal complexes: 6:H.36 BCL.83: 14 residues within 4Å: Chain 6: Q.28, L.31, G.32, I.35, H.36 Chain 7: W.29, F.30, V.33, V.34, H.37, W.46 Ligands: CRT.78, BCL.82, BCL.85 14 PLIP interactions: 4 interactions with chain 6, 10 interactions with chain 7, Hydrophobic interactions: 6:I.35, 6:I.35, 7:F.30, 7:F.30, 7:V.33, 7:V.34, 7:W.46, 7:W.46, 7:W.46, 7:W.46, 7:W.46 Hydrogen bonds: 6:Q.28 pi-Stacking: 6:H.36 Metal complexes: 7:H.37 BCL.85: 12 residues within 4Å: Chain 6: I.11, L.15, V.39 Chain 8: H.36, W.46 Chain 9: W.29, V.33, A.36, H.37 Ligands: CRT.78, BCL.83, BCL.87 7 PLIP interactions: 2 interactions with chain 8, 2 interactions with chain 6, 3 interactions with chain 9, Hydrophobic interactions: 8:W.46, 6:L.15, 6:V.39, 9:W.29, 9:W.29, 9:W.29 Metal complexes: 8:H.36 BCL.87: 13 residues within 4Å: Chain 8: Q.28, L.31, G.32, I.35, H.36 Chain 9: W.29, F.30, V.33, H.37, W.46 Ligands: BCL.22, BCL.85, CRT.86 9 PLIP interactions: 2 interactions with chain 8, 7 interactions with chain 9, Hydrophobic interactions: 8:L.31, 9:F.30, 9:V.33, 9:W.46, 9:W.46, 9:W.46, 9:W.46 Hydrogen bonds: 8:Q.28 Metal complexes: 9:H.37

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.7: 28 residues within 4Å: Chain B: F.42, T.43, G.46, V.47, C.101, A.102, A.105, F.106, W.109, E.113, F.130, A.133, Y.137, Y.157, G.158, I.159, H.162, A.246, A.250 Chain C: Y.210, A.213, L.214, M.218, W.252, T.255, M.256 Ligands: BCL.6, BCL.9 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:T.43, B:V.47, B:A.105, B:F.106, B:F.130, B:F.130, B:F.130, B:Y.137, B:Y.157, B:Y.157, B:H.162, B:A.250, C:A.213 BPH.12: 26 residues within 4Å: Chain B: F.190, C.193, L.194, S.197, M.198, I.228, V.229 Chain C: I.61, G.64, L.65, I.68, S.125, I.126, W.129, L.146, A.149, F.150, A.153, A.273, T.276, V.277 Ligands: BCL.10, BCL.11, CRT.15, PEF.18, PEF.50 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.61, C:L.65, C:L.65, C:I.68, C:A.149, C:F.150, C:F.150, C:T.276, C:V.277 pi-Stacking: C:F.150

1 x UQ8: Ubiquinone-8(Non-covalent)

UQ8.8: 22 residues within 4Å: Chain B: F.132, T.191, M.198, H.199, L.202, E.221, N.222, F.225, Y.231, S.232, I.233, G.234, A.235, I.238, L.241, F.244, L.247, S.248, F.251 Chain C: I.7 Ligands: BCL.10, PEF.18 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:F.132, B:F.132, B:T.191, B:M.198, B:F.225, B:F.225, B:Y.231, B:I.233, B:I.238, B:L.241, B:L.241, B:F.244, B:F.244, B:F.244, B:F.251, C:I.7 Hydrogen bonds: B:G.234

1 x FE: FE (III) ION(Non-covalent)

FE.13: 5 residues within 4Å: Chain B: H.199, H.239 Chain C: H.219, E.234, H.266 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Metal complexes: C:H.219, C:E.234, C:H.266, B:H.199, B:H.239

1 x MQ8: MENAQUINONE 8(Non-covalent)

MQ8.14: 21 residues within 4Å: Chain B: T.43, L.44, V.47, W.109 Chain C: L.215, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, V.260, T.261, M.262, I.265 Chain E: V.30, L.34 Ligands: BCL.9, PEF.20 22 PLIP interactions: 16 interactions with chain C, 2 interactions with chain E, 4 interactions with chain B Hydrophobic interactions: C:L.215, C:L.215, C:T.222, C:A.248, C:A.249, C:W.252, C:F.258, C:F.258, C:F.258, C:N.259, C:V.260, C:V.260, C:I.265, E:V.30, E:L.34, B:T.43, B:L.44, B:V.47, B:W.109 Hydrogen bonds: C:T.222, C:V.260 pi-Stacking: C:W.252

17 x CRT: SPIRILLOXANTHIN(Non-covalent)

CRT.15: 27 residues within 4Å: Chain C: I.68, I.71, G.72, F.73, L.76, L.116, G.119, L.120, T.123, Y.157, L.160, G.161, F.162, W.171, V.175, P.176, F.177, G.178, I.179, H.182 Chain O: M.37, I.38, S.41 Chain Q: M.37 Ligands: BCL.10, BCL.11, BPH.12 14 PLIP interactions: 13 interactions with chain C, 1 interactions with chain O Hydrophobic interactions: C:I.71, C:L.116, C:L.120, C:L.120, C:T.123, C:F.162, C:W.171, C:V.175, C:V.175, C:F.177, C:F.177, C:F.177, C:H.182, O:I.38 CRT.23: 21 residues within 4Å: Chain E: L.8, K.10, I.11, L.13 Chain G: L.21, I.24, F.27, Q.28, L.31, I.35, I.38 Chain H: E.17, F.18, I.21, F.22, M.26 Chain I: L.33, H.36, M.37 Ligands: BCL.29, BCL.31 15 PLIP interactions: 5 interactions with chain G, 6 interactions with chain H, 2 interactions with chain E, 2 interactions with chain I Hydrophobic interactions: G:L.21, G:I.24, G:I.24, G:L.31, G:I.38, H:E.17, H:F.18, H:F.18, H:I.21, H:I.21, H:F.22, E:I.11, E:I.11, I:L.33, I:L.33 CRT.26: 22 residues within 4Å: Chain 8: N.7, L.8, K.10, I.11, L.13 Chain E: I.24, F.27, Q.28, L.31, I.35 Chain F: E.17, F.18, I.21, F.22, S.25, M.26 Chain G: L.33, H.36, M.37 Ligands: BCL.22, BCL.25, BCL.28 17 PLIP interactions: 5 interactions with chain E, 6 interactions with chain F, 4 interactions with chain 8, 2 interactions with chain G Hydrophobic interactions: E:I.24, E:F.27, E:F.27, E:L.31, E:L.31, F:F.18, F:F.18, F:I.21, F:I.21, F:F.22, F:F.22, 8:L.8, 8:I.11, 8:I.11, 8:L.13, G:L.33, G:H.36 CRT.33: 17 residues within 4Å: Chain G: K.10, I.11, L.13 Chain I: I.24, F.27, L.31, I.35, I.38 Chain J: F.18, I.21, F.22, M.26 Chain K: H.36, M.37 Ligands: BCL.31, BCL.32, BCL.35 14 PLIP interactions: 9 interactions with chain J, 4 interactions with chain I, 1 interactions with chain G Hydrophobic interactions: J:F.18, J:F.18, J:I.21, J:I.21, J:F.22, J:F.22, J:F.22, J:F.22, J:M.26, I:I.24, I:F.27, I:L.31, I:I.38, G:K.10 CRT.37: 24 residues within 4Å: Chain I: N.7, L.8, K.10, I.11, L.13, I.14 Chain K: I.24, F.27, Q.28, L.31, L.34, I.35 Chain L: E.17, F.18, I.21, F.22, S.25 Chain M: G.32, L.33, H.36, M.37 Ligands: BCL.35, BCL.36, BCL.39 16 PLIP interactions: 7 interactions with chain L, 3 interactions with chain I, 6 interactions with chain K Hydrophobic interactions: L:F.18, L:F.18, L:F.18, L:I.21, L:I.21, L:F.22, L:F.22, I:K.10, I:I.11, I:I.14, K:I.24, K:F.27, K:F.27, K:Q.28, K:L.31, K:L.34 CRT.41: 24 residues within 4Å: Chain K: L.8, K.10, I.11, L.13 Chain M: L.21, I.24, F.27, Q.28, L.31, I.35, I.38 Chain N: E.17, F.18, I.21, F.22, S.25, M.26 Chain O: I.29, L.33, H.36, M.37 Ligands: BCL.39, BCL.40, BCL.43 15 PLIP interactions: 3 interactions with chain O, 2 interactions with chain K, 5 interactions with chain M, 5 interactions with chain N Hydrophobic interactions: O:I.29, O:L.33, O:H.36, K:L.8, K:I.11, M:L.21, M:I.24, M:F.27, M:F.27, M:I.38, N:E.17, N:F.18, N:F.18, N:I.21, N:F.22 CRT.45: 20 residues within 4Å: Chain M: K.10, I.11 Chain O: L.21, I.24, F.27, Q.28, L.31, I.35, I.38 Chain P: E.17, F.18, I.21, F.22, S.25, M.26 Chain Q: L.33, H.36, M.37 Ligands: BCL.44, BCL.47 18 PLIP interactions: 8 interactions with chain P, 2 interactions with chain Q, 6 interactions with chain O, 2 interactions with chain M Hydrophobic interactions: P:F.18, P:F.18, P:I.21, P:I.21, P:F.22, P:F.22, P:F.22, P:M.26, Q:L.33, Q:H.36, O:L.21, O:I.24, O:Q.28, O:L.31, O:L.31, O:I.38, M:K.10, M:I.11 CRT.49: 22 residues within 4Å: Chain O: L.8, K.10, I.11 Chain Q: I.24, F.27, Q.28, L.31, I.35, I.38 Chain R: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain S: L.33, H.36, M.37 Ligands: BCL.47, BCL.48, BCL.52 15 PLIP interactions: 2 interactions with chain O, 7 interactions with chain Q, 4 interactions with chain R, 2 interactions with chain S Hydrophobic interactions: O:I.11, O:I.11, Q:I.24, Q:I.24, Q:F.27, Q:F.27, Q:L.31, Q:L.31, Q:I.38, R:E.17, R:I.21, R:F.22, R:F.22, S:L.33, S:H.36 CRT.53: 18 residues within 4Å: Chain C: F.84 Chain S: K.10, I.11, L.13 Chain U: F.27, I.38 Chain V: I.21, F.22, S.25, M.26, F.30 Chain W: I.29, G.32, L.33, H.36, M.37 Ligands: BCL.57, BCL.60 11 PLIP interactions: 2 interactions with chain S, 2 interactions with chain U, 2 interactions with chain W, 5 interactions with chain V Hydrophobic interactions: S:I.11, S:L.13, U:F.27, U:I.38, W:L.33, W:H.36, V:I.21, V:I.21, V:F.22, V:M.26, V:F.30 CRT.55: 22 residues within 4Å: Chain Q: K.10, I.11, L.13, I.14 Chain S: L.21, I.24, F.27, Q.28, L.31, I.35, I.38 Chain T: E.14, E.17, F.18, I.21, F.22 Chain U: L.33, H.36, M.37 Ligands: BCL.52, BCL.54, BCL.57 16 PLIP interactions: 2 interactions with chain U, 8 interactions with chain S, 6 interactions with chain T Hydrophobic interactions: U:L.33, U:H.36, S:L.21, S:I.24, S:I.24, S:F.27, S:F.27, S:L.31, S:L.31, S:I.38, T:F.18, T:F.18, T:I.21, T:F.22, T:F.22, T:F.22 CRT.61: 18 residues within 4Å: Chain 0: G.32, L.33, H.36 Chain W: L.8, K.10, I.11 Chain Y: I.24, F.27, Q.28, L.31, I.35 Chain Z: E.17, F.18, I.21, F.22, M.26 Ligands: BCL.65, BCL.68 15 PLIP interactions: 8 interactions with chain Z, 4 interactions with chain W, 2 interactions with chain Y, 1 interactions with chain 0 Hydrophobic interactions: Z:E.17, Z:F.18, Z:F.18, Z:I.21, Z:I.21, Z:F.22, Z:F.22, Z:F.22, W:L.8, W:K.10, W:I.11, Y:I.24, Y:L.31, 0:L.33 Hydrogen bonds: W:K.10 CRT.63: 22 residues within 4Å: Chain U: I.11, L.13, I.14 Chain V: T.8 Chain W: L.21, I.24, F.27, Q.28, L.31, L.34 Chain X: F.18, I.21, F.22, S.25, M.26, F.30 Chain Y: L.33, H.36, M.37 Ligands: BCL.60, BCL.62, BCL.65 17 PLIP interactions: 6 interactions with chain W, 6 interactions with chain X, 1 interactions with chain Y, 4 interactions with chain U Hydrophobic interactions: W:L.21, W:F.27, W:F.27, W:L.31, W:L.31, W:L.34, X:F.18, X:F.18, X:F.22, X:F.22, X:M.26, X:F.30, Y:L.33, U:I.14, U:I.14, U:I.14 Hydrogen bonds: U:I.14 CRT.69: 20 residues within 4Å: Chain 0: K.10, I.11, L.13 Chain 2: L.21, I.24, Q.28, L.31, I.35, I.38 Chain 3: E.17, F.18, I.21, F.22, M.26 Chain 4: L.33, H.36, M.37 Ligands: BCL.74, BCL.75, BCL.77 10 PLIP interactions: 4 interactions with chain 2, 4 interactions with chain 3, 1 interactions with chain 4, 1 interactions with chain 0 Hydrophobic interactions: 2:L.21, 2:I.24, 2:L.31, 2:I.38, 3:F.18, 3:F.18, 3:I.21, 3:F.22, 4:H.36, 0:K.10 CRT.71: 20 residues within 4Å: Chain 0: I.24, Q.28, I.38 Chain 1: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain 2: G.32, H.36, L.40, W.46 Chain Y: K.10, I.11, L.13 Ligands: BCL.68, BCL.70, BCL.74 13 PLIP interactions: 3 interactions with chain Y, 1 interactions with chain 2, 7 interactions with chain 1, 2 interactions with chain 0 Hydrophobic interactions: Y:I.11, Y:L.13, 2:H.36, 1:E.14, 1:F.18, 1:F.18, 1:F.18, 1:I.21, 1:F.22, 1:F.22, 0:I.24, 0:I.38 Hydrogen bonds: Y:K.10 CRT.78: 19 residues within 4Å: Chain 4: L.8, K.10, I.11, L.13, I.14 Chain 6: L.21, I.24, Q.28, L.31, I.35, I.38 Chain 7: F.18, F.22, M.26 Chain 8: L.33, H.36 Ligands: BCL.82, BCL.83, BCL.85 17 PLIP interactions: 4 interactions with chain 4, 2 interactions with chain 8, 7 interactions with chain 6, 4 interactions with chain 7 Hydrophobic interactions: 4:K.10, 4:I.11, 4:I.14, 4:I.14, 8:L.33, 8:H.36, 6:L.21, 6:I.24, 6:I.24, 6:L.31, 6:L.31, 6:I.35, 6:I.38, 7:F.18, 7:F.18, 7:F.22, 7:F.22 CRT.81: 24 residues within 4Å: Chain 2: K.10, I.11, L.13, I.14 Chain 4: L.21, I.24, Q.28, L.31, I.35, I.38 Chain 5: E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain 6: I.29, L.33, H.36, M.37 Ligands: BCL.77, BCL.79, BCL.82 21 PLIP interactions: 4 interactions with chain 2, 8 interactions with chain 5, 5 interactions with chain 6, 4 interactions with chain 4 Hydrophobic interactions: 2:I.11, 2:I.11, 2:I.11, 2:I.14, 5:F.18, 5:F.18, 5:I.21, 5:F.22, 5:F.22, 5:F.22, 5:M.26, 5:F.30, 6:I.29, 6:L.33, 6:L.33, 6:H.36, 4:L.21, 4:I.24, 4:I.35, 4:I.38 Hydrogen bonds: 6:M.37 CRT.86: 23 residues within 4Å: Chain 6: K.10, I.11, L.13 Chain 7: D.12 Chain 8: L.21, I.24, F.27, Q.28, L.31, L.34 Chain 9: E.17, I.21, F.22, S.25, M.26, F.30 Chain E: I.29, G.32, L.33, H.36, M.37 Ligands: BCL.22, BCL.87 13 PLIP interactions: 5 interactions with chain 9, 2 interactions with chain 6, 5 interactions with chain 8, 1 interactions with chain E Hydrophobic interactions: 9:I.21, 9:I.21, 9:F.22, 9:F.22, 9:F.30, 6:K.10, 6:I.11, 8:L.21, 8:I.24, 8:F.27, 8:F.27, 8:L.31, E:I.29

5 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.16: 9 residues within 4Å: Chain B: L.204, N.208 Chain C: R.267, W.271 Chain D: L.26, Y.29, E.33, R.36, K.65 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 4 interactions with chain C Hydrogen bonds: D:E.33, B:N.208, C:H.145, C:R.267 Hydrophobic interactions: C:W.271 Salt bridges: C:R.267 PEF.17: 8 residues within 4Å: Chain C: Y.4, Q.5, I.7, A.10, Y.38, K.42 Chain D: D.148, K.204 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:I.7 Hydrogen bonds: C:Q.5, C:Y.38, C:K.42, C:K.42 Salt bridges: C:K.42, D:K.204 PEF.18: 13 residues within 4Å: Chain B: Y.231 Chain C: R.30, I.31, G.32, R.33, I.35, I.48, I.61, W.129 Chain Q: R.19 Ligands: UQ8.8, BPH.12, PEF.50 9 PLIP interactions: 1 interactions with chain B, 6 interactions with chain C, 2 interactions with chain Q Hydrophobic interactions: B:Y.231, C:R.33, C:I.35, C:I.48, C:I.61 Hydrogen bonds: C:R.30, C:G.32, Q:R.19 Salt bridges: Q:R.19 PEF.20: 13 residues within 4Å: Chain B: P.29, F.30 Chain C: R.253, M.256, F.258 Chain D: R.31, K.35, Y.39, R.48, S.49, G.57, F.58 Ligands: MQ8.14 8 PLIP interactions: 7 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:R.31, D:Y.39, D:S.49, D:F.58 Salt bridges: D:R.31, D:K.35, D:R.48 Hydrophobic interactions: C:F.258 PEF.50: 8 residues within 4Å: Chain S: S.23, V.30, L.33, L.34, M.37 Chain U: V.22 Ligands: BPH.12, PEF.18 3 PLIP interactions: 3 interactions with chain S Hydrophobic interactions: S:V.30, S:L.34, S:M.37

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.19: 9 residues within 4Å: Chain C: G.26, L.28, Y.52, G.54, L.55, T.56, K.135, R.136 Chain O: R.19 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain O Hydrogen bonds: C:Y.52, C:L.55, C:T.56, C:R.136 Salt bridges: C:K.135, O:R.19 PO4.21: 3 residues within 4Å: Chain C: H.301 Chain D: S.2, Q.13 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.2, D:S.2, D:S.2, D:Q.13 Salt bridges: C:H.301 PO4.72: 1 residues within 4Å: Chain 0: R.19 1 PLIP interactions: 1 interactions with chain 0 Hydrogen bonds: 0:R.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niwa, S. et al., Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom. Nature (2014)

Release Date

2014-07-09

Peptides

Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center L subunit: B
Photosynthetic reaction center M subunit: C
Photosynthetic reaction center H subunit: D
LH1 alpha polypeptide: EGIKMOQSUWY02468
LH1 beta polypeptide: FHJLNPRTVXZ13579

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AC

B
AL

C
AM

D
AH

E
AA

G
AD

I
AF

K
AI

M
AK

O
AO

Q
AQ

S
AS

U
AU

W
AW

Y
AY

0
A1

2
A3

4
A5

6
A7

8
A9

F
AB

H
AE

J
AG

L
AJ

N
AN

P
AP

R
AR

T
AT

V
AV

X
AX

Z
AZ

1
A2

3
A4

5
A6

7
A8

9
A0

Membrane

We predict this structure to be a membrane protein.
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Photosynthetic reaction center cytochrome c subunit

Photosynthetic reaction center L subunit

Photosynthetic reaction center M subunit

Photosynthetic reaction center H subunit

LH1 alpha polypeptide

LH1 beta polypeptide

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