SMTL ID : 5b5n.1 (1 other biounit)

Crystal structure of the Ba-substituted LH1-RC complex from Tch. tepidum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-1-16-16-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 20 residues within 4Å: Chain A: Y.76, Q.77, N.78, V.79, Q.80, V.81, L.82, F.90, M.94, V.97, T.98, C.107, C.110, H.111, W.116, A.117, K.124, S.127, R.128 Ligands: HEM.2 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:Y.76, A:Y.76, A:Y.76, A:F.90, A:M.94, A:V.97, A:W.116, A:W.116, A:W.116, A:K.124 Hydrogen bonds: A:Q.77, A:N.78, A:N.78, A:Q.80, A:V.81, A:L.82 Salt bridges: A:K.124, A:R.128 pi-Stacking: A:F.90 Metal complexes: A:H.111 HEM.2: 25 residues within 4Å: Chain A: V.97, V.101, Y.109, Y.122, T.123, V.126, S.127, M.130, F.131, L.133, V.134, C.152, C.155, H.156, P.160, V.161, P.162, A.165, I.279, R.295, L.303, R.304, V.305, C.310 Ligands: HEM.1 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:V.97, A:V.101, A:V.101, A:V.126, A:M.130, A:L.133, A:V.134, A:V.161, A:A.165, A:I.279, A:V.305 Salt bridges: A:R.295, A:R.295 Metal complexes: A:H.156 HEM.3: 25 residues within 4Å: Chain A: I.210, R.211, I.212, T.213, T.232, F.233, M.236, M.237, I.239, S.240, L.243, V.245, C.247, C.250, H.251, F.256, N.257, W.259, R.266, A.269, W.270, R.274 Chain B: L.174 Chain C: I.191, Y.317 21 PLIP interactions: 19 interactions with chain A, 2 interactions with chain C, Hydrophobic interactions: A:T.232, A:F.233, A:F.233, A:M.236, A:I.239, A:L.243, A:V.245, A:F.256, A:F.256, A:F.256, A:W.259, A:R.266, A:A.269, C:I.191, C:I.191 Hydrogen bonds: A:I.212, A:T.213, A:T.213 Salt bridges: A:R.211, A:R.274 Metal complexes: A:H.251 HEM.4: 23 residues within 4Å: Chain A: H.144, V.145, A.146, T.148, G.149, V.150, L.204, I.239, L.243, F.249, K.265, T.268, A.269, A.272, I.273, V.276, S.306, C.307, C.310, H.311, N.315, K.316, P.317 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:V.150, A:L.204, A:I.239, A:L.243, A:L.243, A:K.265, A:T.268, A:A.269, A:A.272, A:I.273, A:P.317 Hydrogen bonds: A:T.148, A:N.315 Salt bridges: A:K.265, A:K.316, A:K.316 pi-Cation interactions: A:H.144 Metal complexes: A:H.311

19 x BA: BARIUM ION(Non-covalent)

BA.5: 4 residues within 4Å: Chain A: N.42, Y.43 Chain B: Q.172, T.265 Ligand excluded by PLIP BA.11: 4 residues within 4Å: Chain B: P.61, Q.66 Chain E: S.41 Chain G: D.48 Ligand excluded by PLIP BA.12: 1 residues within 4Å: Chain B: W.281 Ligand excluded by PLIP BA.30: 6 residues within 4Å: Chain E: D.43, N.45, D.49 Chain F: R.44 Chain G: Y.55, Q.56 Ligand excluded by PLIP BA.31: 5 residues within 4Å: Chain 8: D.43, N.45, D.49 Chain E: Y.55, Q.56 Ligand excluded by PLIP BA.34: 5 residues within 4Å: Chain G: D.43, N.45, D.49 Chain I: Y.55, Q.56 Ligand excluded by PLIP BA.37: 5 residues within 4Å: Chain I: D.43, N.45, D.49 Chain K: Y.55, Q.56 Ligand excluded by PLIP BA.43: 6 residues within 4Å: Chain K: D.43, N.45, D.49 Chain L: R.44 Chain M: Y.55, Q.56 Ligand excluded by PLIP BA.45: 5 residues within 4Å: Chain M: D.43, N.45, D.49 Chain O: Y.55, Q.56 Ligand excluded by PLIP BA.49: 5 residues within 4Å: Chain O: D.43, N.45, D.49 Chain Q: Y.55, Q.56 Ligand excluded by PLIP BA.53: 5 residues within 4Å: Chain Q: D.43, N.45, D.49 Chain S: Y.55, Q.56 Ligand excluded by PLIP BA.58: 5 residues within 4Å: Chain S: D.43, N.45, D.49 Chain U: Y.55, Q.56 Ligand excluded by PLIP BA.62: 6 residues within 4Å: Chain U: D.43, N.45, D.49 Chain V: R.44 Chain W: Y.55, Q.56 Ligand excluded by PLIP BA.66: 6 residues within 4Å: Chain W: N.45, D.49, I.51 Chain X: R.44 Chain Y: Y.55, Q.56 Ligand excluded by PLIP BA.70: 5 residues within 4Å: Chain 0: Y.55, Q.56 Chain Y: D.43, N.45, D.49 Ligand excluded by PLIP BA.74: 6 residues within 4Å: Chain 0: D.43, N.45, D.49 Chain 1: R.44 Chain 2: Y.55, Q.56 Ligand excluded by PLIP BA.78: 6 residues within 4Å: Chain 2: D.43, N.45, D.49 Chain 3: R.44 Chain 4: Y.55, Q.56 Ligand excluded by PLIP BA.82: 5 residues within 4Å: Chain 4: D.43, N.45, D.49 Chain 6: Y.55, Q.56 Ligand excluded by PLIP BA.87: 5 residues within 4Å: Chain 6: D.43, N.45, D.49 Chain 8: Y.55, Q.56 Ligand excluded by PLIP

36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.6: 24 residues within 4Å: Chain B: F.106, A.133, I.134, A.136, Y.137, L.140, V.166, S.167, G.170, F.176, H.177, H.182, A.185, I.186, F.189, S.253, C.256, I.257 Chain C: Y.197, Y.210 Ligands: BPH.7, BCL.8, BCL.14, BCL.15 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:F.106, B:F.106, B:F.106, B:A.133, B:I.134, B:V.166, B:F.176, B:F.176, B:F.176, B:A.185, B:I.186, B:F.189, B:I.257 Hydrogen bonds: B:I.257 pi-Stacking: B:H.182 BCL.8: 17 residues within 4Å: Chain B: M.183, I.186, S.187, F.190, T.191 Chain C: F.90, L.160, V.175, I.179, H.182, L.183, T.186 Ligands: BCL.6, UQ8.9, BCL.15, BPH.16, CRT.18 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain B, Hydrophobic interactions: C:F.90, C:L.160, C:V.175, B:I.186, B:I.186 Metal complexes: C:H.182 Hydrogen bonds: B:T.191 pi-Stacking: B:F.190 BCL.14: 16 residues within 4Å: Chain B: V.47, Y.137, F.155, I.159, L.160, H.162, L.163, V.166 Chain C: Y.197, M.203, I.206, A.207, Y.210 Ligands: BCL.6, BPH.7, BCL.15 11 PLIP interactions: 5 interactions with chain C, 6 interactions with chain B, Hydrophobic interactions: C:Y.197, C:I.206, C:I.206, C:Y.210, B:V.47, B:Y.137, B:F.155, B:L.163, B:V.166 pi-Stacking: C:Y.210 Metal complexes: B:H.162 BCL.15: 28 residues within 4Å: Chain B: H.177, F.190 Chain C: L.122, I.126, A.153, F.156, Y.157, L.160, T.186, A.187, F.189, S.190, L.196, Y.197, H.202, S.205, I.206, L.209, Y.210, T.276, A.280, G.283, I.284 Ligands: BCL.6, BCL.8, BCL.14, BPH.16, CRT.18 18 PLIP interactions: 17 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:L.122, C:L.122, C:F.156, C:F.156, C:F.156, C:Y.157, C:L.160, C:T.186, C:F.189, C:L.196, C:I.206, C:I.206, C:L.209, C:Y.210, C:T.276, C:A.280, B:F.190 Salt bridges: C:H.202 BCL.28: 21 residues within 4Å: Chain 8: F.2, T.3, L.8, W.12 Chain 9: M.23, M.26, L.47 Chain E: V.25, Q.28, I.29, G.32, H.36, W.46 Chain F: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.29, CRT.91, BCL.92 12 PLIP interactions: 3 interactions with chain F, 5 interactions with chain 8, 1 interactions with chain 9, 3 interactions with chain E, Hydrophobic interactions: F:W.29, F:A.36, 8:F.2, 8:F.2, 8:F.2, 8:L.8, 8:W.12, 9:L.47, E:I.29, E:W.46 Hydrogen bonds: F:H.37 Metal complexes: E:H.36 BCL.29: 15 residues within 4Å: Chain E: Q.28, L.31, G.32, I.35, H.36, V.39 Chain F: W.29, F.30, V.33, H.37, A.40, W.46 Ligands: BCL.28, BCL.32, CRT.89 10 PLIP interactions: 3 interactions with chain E, 7 interactions with chain F, Hydrophobic interactions: E:L.31, E:V.39, F:F.30, F:V.33, F:A.40, F:W.46, F:W.46, F:W.46 Hydrogen bonds: E:Q.28 Metal complexes: F:H.37 BCL.32: 22 residues within 4Å: Chain E: V.20, S.23, I.24, I.35 Chain G: V.22, V.25, Q.28, I.29, G.32, H.36, W.46 Chain H: W.29, L.32, V.33, A.36, H.37, A.40, R.44 Ligands: PEF.23, BCL.29, BCL.33, CRT.89 15 PLIP interactions: 8 interactions with chain G, 4 interactions with chain E, 3 interactions with chain H, Hydrophobic interactions: G:V.22, G:Q.28, G:I.29, G:W.46, G:W.46, G:W.46, G:W.46, E:V.20, E:V.20, E:I.24, E:I.35, H:W.29, H:A.36, H:A.40 pi-Stacking: G:H.36 BCL.33: 16 residues within 4Å: Chain G: Q.28, L.31, G.32, I.35, H.36, V.39 Chain H: W.29, F.30, V.33, V.34, H.37, A.40, W.46 Ligands: BCL.32, CRT.35, BCL.36 9 PLIP interactions: 3 interactions with chain G, 6 interactions with chain H, Hydrophobic interactions: G:V.39, H:F.30, H:V.33, H:V.34, H:A.40, H:W.46 Hydrogen bonds: G:Q.28, G:H.36 Metal complexes: H:H.37 BCL.36: 17 residues within 4Å: Chain G: I.11, W.12, I.35 Chain H: M.23 Chain I: V.25, Q.28, I.29, G.32, H.36, W.46 Chain J: W.29, V.33, A.36, H.37 Ligands: BCL.33, CRT.35, BCL.39 14 PLIP interactions: 6 interactions with chain I, 3 interactions with chain G, 5 interactions with chain J, Hydrophobic interactions: I:Q.28, I:W.46, I:W.46, I:W.46, I:W.46, G:I.11, G:W.12, G:I.35, J:W.29, J:W.29, J:W.29, J:A.36 Metal complexes: I:H.36 Hydrogen bonds: J:H.37 BCL.39: 16 residues within 4Å: Chain I: Q.28, L.31, G.32, I.35, H.36 Chain J: W.29, F.30, V.33, H.37, A.40, W.41, W.46, L.47 Ligands: BCL.36, CRT.38, BCL.40 14 PLIP interactions: 12 interactions with chain J, 2 interactions with chain I, Hydrophobic interactions: J:V.33, J:V.33, J:A.40, J:W.41, J:W.46, J:W.46, J:W.46, J:W.46, J:W.46, J:L.47 pi-Stacking: J:H.37 Metal complexes: J:H.37 Hydrogen bonds: I:Q.28, I:H.36 BCL.40: 17 residues within 4Å: Chain I: S.23, F.27, I.35 Chain K: V.25, I.29, H.36, V.39, L.44, W.46 Chain L: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.38, BCL.39, BCL.42 9 PLIP interactions: 2 interactions with chain I, 4 interactions with chain K, 3 interactions with chain L, Hydrophobic interactions: I:F.27, I:I.35, K:V.39, K:L.44, K:W.46, K:W.46, L:W.29, L:W.29 Hydrogen bonds: L:H.37 BCL.42: 18 residues within 4Å: Chain K: Q.28, L.31, G.32, I.35, H.36, V.39, L.44 Chain L: W.29, F.30, V.33, V.34, H.37, A.40, W.41, W.46 Ligands: BCL.40, CRT.41, BCL.44 17 PLIP interactions: 13 interactions with chain L, 4 interactions with chain K, Hydrophobic interactions: L:V.33, L:V.33, L:V.34, L:H.37, L:A.40, L:W.41, L:W.46, L:W.46, L:W.46, L:W.46, L:W.46, K:L.31, K:I.35, K:L.44 pi-Stacking: L:H.37 Metal complexes: L:H.37 Hydrogen bonds: K:Q.28 BCL.44: 18 residues within 4Å: Chain K: L.8, I.11, I.35 Chain L: M.23 Chain M: Q.28, I.29, G.32, H.36, V.39, W.46 Chain N: W.29, V.33, A.36, H.37 Ligands: CRT.41, BCL.42, BCL.46, CRT.47 12 PLIP interactions: 3 interactions with chain K, 6 interactions with chain M, 3 interactions with chain N, Hydrophobic interactions: K:L.8, K:I.11, K:I.35, M:V.39, M:W.46, M:W.46, M:W.46, M:W.46, N:W.29, N:W.29 Metal complexes: M:H.36 Hydrogen bonds: N:H.37 BCL.46: 13 residues within 4Å: Chain M: Q.28, L.31, G.32, H.36 Chain N: F.30, V.33, V.34, H.37, W.41, W.46 Ligands: BCL.44, CRT.47, BCL.50 12 PLIP interactions: 11 interactions with chain N, 1 interactions with chain M, Hydrophobic interactions: N:F.30, N:V.33, N:V.33, N:V.34, N:H.37, N:W.41, N:W.41, N:W.46, N:W.46, N:W.46 Metal complexes: N:H.37 Hydrogen bonds: M:Q.28 BCL.48: 15 residues within 4Å: Chain O: Q.28, L.31, G.32, I.35, H.36 Chain P: F.30, V.33, H.37, L.38, W.41, W.46, L.47 Ligands: BCL.50, CRT.51, BCL.52 8 PLIP interactions: 7 interactions with chain P, 1 interactions with chain O, Hydrophobic interactions: P:V.33, P:L.38, P:W.41, P:W.41, P:W.46, P:W.46, P:W.46 Hydrogen bonds: O:Q.28 BCL.50: 14 residues within 4Å: Chain M: I.35 Chain N: M.26 Chain O: Q.28, I.29, H.36, V.39, W.46 Chain P: W.29, V.33, A.36, H.37 Ligands: BCL.46, CRT.47, BCL.48 10 PLIP interactions: 5 interactions with chain P, 3 interactions with chain O, 2 interactions with chain M, Hydrophobic interactions: P:W.29, P:W.29, P:W.29, P:A.36, O:Q.28, O:V.39, O:W.46, M:I.35, M:I.35 Hydrogen bonds: P:H.37 BCL.52: 15 residues within 4Å: Chain Q: Q.28, I.29, G.32, H.36, V.39, W.46 Chain R: W.29, L.32, V.33, A.36, H.37 Ligands: BCL.48, CRT.51, CRT.54, BCL.55 10 PLIP interactions: 6 interactions with chain R, 4 interactions with chain Q, Hydrophobic interactions: R:W.29, R:W.29, R:W.29, R:W.29, R:L.32, R:A.36, Q:V.39, Q:W.46, Q:W.46 Metal complexes: Q:H.36 BCL.55: 15 residues within 4Å: Chain Q: Q.28, L.31, G.32, I.35, H.36 Chain R: F.30, V.33, H.37, A.40, W.41, W.46, L.47 Ligands: BCL.52, CRT.54, BCL.57 11 PLIP interactions: 2 interactions with chain Q, 9 interactions with chain R, Hydrogen bonds: Q:Q.28, Q:H.36 Hydrophobic interactions: R:V.33, R:V.33, R:A.40, R:W.46, R:W.46, R:W.46, R:W.46, R:L.47 Metal complexes: R:H.37 BCL.57: 20 residues within 4Å: Chain Q: L.15, R.19, V.20, S.23, I.35 Chain S: V.22, V.25, Q.28, I.29, H.36, V.39, W.46 Chain T: W.29, A.36, H.37, A.40 Ligands: CRT.54, BCL.55, CRT.59, BCL.60 17 PLIP interactions: 4 interactions with chain Q, 9 interactions with chain S, 4 interactions with chain T, Hydrophobic interactions: Q:L.15, Q:R.19, Q:V.20, Q:I.35, S:V.22, S:V.25, S:Q.28, S:I.29, S:V.39, S:W.46, S:W.46, S:W.46, T:W.29, T:A.36, T:A.40 Metal complexes: S:H.36 Hydrogen bonds: T:H.37 BCL.60: 16 residues within 4Å: Chain S: Q.28, L.31, G.32, I.35, H.36 Chain T: F.30, V.33, H.37, A.40, W.41, W.46, L.47 Chain U: W.46 Ligands: BCL.57, CRT.59, BCL.61 9 PLIP interactions: 2 interactions with chain S, 7 interactions with chain T, Hydrogen bonds: S:Q.28, S:H.36 Hydrophobic interactions: T:V.33, T:A.40, T:W.41, T:W.46, T:W.46, T:W.46, T:L.47 BCL.61: 18 residues within 4Å: Chain S: L.15, I.35 Chain U: V.25, Q.28, I.29, H.36, V.39, W.46 Chain V: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: CRT.59, BCL.60, CRT.63, BCL.64 15 PLIP interactions: 7 interactions with chain U, 2 interactions with chain S, 6 interactions with chain V, Hydrophobic interactions: U:V.25, U:V.25, U:I.29, U:V.39, U:W.46, U:W.46, S:L.15, S:I.35, V:W.29, V:W.29, V:W.29, V:A.36, V:A.40 Metal complexes: U:H.36 Hydrogen bonds: V:H.37 BCL.64: 17 residues within 4Å: Chain U: Q.28, L.31, G.32, I.35, H.36, V.39, L.44 Chain V: F.30, V.33, H.37, A.40, W.41, W.46, L.47 Ligands: BCL.61, CRT.63, BCL.65 16 PLIP interactions: 4 interactions with chain U, 12 interactions with chain V, Hydrophobic interactions: U:I.35, U:V.39, V:F.30, V:F.30, V:V.33, V:H.37, V:A.40, V:W.41, V:W.41, V:W.46, V:W.46, V:W.46, V:L.47 Hydrogen bonds: U:Q.28, U:H.36 Metal complexes: V:H.37 BCL.65: 15 residues within 4Å: Chain U: I.11, L.15, I.24, I.35 Chain W: V.25, Q.28, H.36, V.39, W.46 Chain X: W.29, A.36, H.37 Ligands: CRT.63, BCL.64, BCL.68 14 PLIP interactions: 4 interactions with chain U, 5 interactions with chain X, 5 interactions with chain W, Hydrophobic interactions: U:I.11, U:L.15, U:I.24, U:I.35, X:W.29, X:W.29, X:W.29, X:A.36, W:V.39, W:W.46, W:W.46, W:W.46 Hydrogen bonds: X:H.37 Metal complexes: W:H.36 BCL.68: 14 residues within 4Å: Chain W: Q.28, L.31, G.32, I.35, H.36 Chain X: W.29, F.30, V.33, H.37, W.46, L.47 Ligands: BCL.65, CRT.67, BCL.69 12 PLIP interactions: 2 interactions with chain W, 10 interactions with chain X, Hydrogen bonds: W:Q.28, W:H.36 Hydrophobic interactions: X:F.30, X:V.33, X:V.33, X:H.37, X:W.46, X:W.46, X:W.46 pi-Stacking: X:H.37, X:H.37 Metal complexes: X:H.37 BCL.69: 19 residues within 4Å: Chain W: L.8, I.35 Chain X: F.22 Chain Y: V.25, Q.28, I.29, G.32, H.36, V.39, W.46 Chain Z: W.29, L.32, V.33, A.36, H.37, A.40 Ligands: CRT.67, BCL.68, BCL.72 16 PLIP interactions: 9 interactions with chain Y, 4 interactions with chain Z, 2 interactions with chain W, 1 interactions with chain X, Hydrophobic interactions: Y:Q.28, Y:I.29, Y:V.39, Y:W.46, Y:W.46, Y:W.46, Y:W.46, Y:W.46, Z:W.29, Z:A.36, Z:A.40, W:L.8, W:I.35, X:F.22 Metal complexes: Y:H.36 Hydrogen bonds: Z:H.37 BCL.72: 15 residues within 4Å: Chain Y: Q.28, G.32, I.35, H.36, L.44 Chain Z: W.29, F.30, V.33, H.37, W.41, W.46, L.47 Ligands: BCL.69, CRT.71, BCL.73 11 PLIP interactions: 8 interactions with chain Z, 3 interactions with chain Y, Hydrophobic interactions: Z:F.30, Z:V.33, Z:W.41, Z:W.41, Z:W.46, Z:W.46, Z:L.47, Y:I.35, Y:L.44 Metal complexes: Z:H.37 Hydrogen bonds: Y:Q.28 BCL.73: 15 residues within 4Å: Chain 0: V.25, I.29, H.36, W.46 Chain 1: W.29, L.32, V.33, A.36, H.37 Chain Y: S.23, I.24, I.35 Ligands: CRT.71, BCL.72, BCL.76 10 PLIP interactions: 6 interactions with chain 0, 2 interactions with chain 1, 2 interactions with chain Y, Hydrophobic interactions: 0:V.25, 0:I.29, 0:I.29, 0:W.46, 0:W.46, 1:A.36, Y:I.24, Y:I.35 Metal complexes: 0:H.36 Hydrogen bonds: 1:H.37 BCL.76: 13 residues within 4Å: Chain 0: Q.28, L.31, G.32, I.35, H.36 Chain 1: F.30, V.33, H.37, W.41, W.46 Ligands: BCL.73, CRT.75, BCL.77 7 PLIP interactions: 1 interactions with chain 0, 6 interactions with chain 1, Hydrogen bonds: 0:Q.28 Hydrophobic interactions: 1:F.30, 1:V.33, 1:V.33, 1:H.37, 1:W.46 Metal complexes: 1:H.37 BCL.77: 15 residues within 4Å: Chain 0: I.24, F.27, I.35 Chain 2: V.25, I.29, H.36, W.46 Chain 3: W.29, V.33, A.36, H.37 Ligands: CRT.75, BCL.76, CRT.79, BCL.80 13 PLIP interactions: 5 interactions with chain 2, 3 interactions with chain 3, 5 interactions with chain 0, Hydrophobic interactions: 2:V.25, 2:I.29, 2:W.46, 2:W.46, 2:W.46, 3:W.29, 3:A.36, 0:I.24, 0:I.24, 0:F.27, 0:F.27, 0:I.35 Hydrogen bonds: 3:H.37 BCL.80: 15 residues within 4Å: Chain 2: Q.28, L.31, G.32, I.35, H.36, L.44 Chain 3: W.29, F.30, V.33, H.37, W.41, W.46 Ligands: BCL.77, CRT.79, BCL.81 12 PLIP interactions: 3 interactions with chain 2, 9 interactions with chain 3, Hydrophobic interactions: 2:I.35, 2:L.44, 3:F.30, 3:V.33, 3:V.33, 3:H.37, 3:W.41, 3:W.46, 3:W.46, 3:W.46 Hydrogen bonds: 2:Q.28 Metal complexes: 3:H.37 BCL.81: 17 residues within 4Å: Chain 2: L.8, W.12, I.35 Chain 3: H.19, F.22 Chain 4: Q.28, I.29, H.36, W.46 Chain 5: W.29, L.32, V.33, A.36, H.37 Ligands: CRT.79, BCL.80, BCL.83 11 PLIP interactions: 3 interactions with chain 2, 4 interactions with chain 5, 1 interactions with chain 3, 3 interactions with chain 4, Hydrophobic interactions: 2:L.8, 2:W.12, 2:I.35, 5:W.29, 5:W.29, 5:A.36, 3:F.22, 4:W.46, 4:W.46, 4:W.46 Hydrogen bonds: 5:H.37 BCL.83: 15 residues within 4Å: Chain 4: Q.28, L.31, G.32, I.35, H.36, V.39 Chain 5: W.29, F.30, V.33, V.34, H.37, W.41, W.46 Ligands: BCL.81, BCL.85 14 PLIP interactions: 3 interactions with chain 4, 11 interactions with chain 5, Hydrophobic interactions: 4:I.35, 4:V.39, 5:F.30, 5:F.30, 5:V.33, 5:V.34, 5:W.41, 5:W.41, 5:W.46, 5:W.46, 5:W.46 Hydrogen bonds: 4:H.36 pi-Stacking: 5:H.37 Metal complexes: 5:H.37 BCL.85: 16 residues within 4Å: Chain 4: W.12, I.24, I.35 Chain 5: F.22, M.23, M.26 Chain 6: H.36, V.39, W.46 Chain 7: W.29, V.33, A.36, H.37 Ligands: BCL.83, CRT.84, BCL.88 13 PLIP interactions: 6 interactions with chain 6, 4 interactions with chain 7, 2 interactions with chain 4, 1 interactions with chain 5, Hydrophobic interactions: 6:V.39, 6:W.46, 6:W.46, 6:W.46, 6:W.46, 7:W.29, 7:W.29, 7:A.36, 4:W.12, 4:I.35, 5:F.22 pi-Stacking: 6:H.36 Hydrogen bonds: 7:H.37 BCL.88: 16 residues within 4Å: Chain 6: Q.28, L.31, G.32, I.35, H.36, V.39, L.44 Chain 7: W.29, F.30, V.33, H.37, W.46 Chain 8: L.47 Ligands: BCL.85, CRT.86, BCL.90 8 PLIP interactions: 6 interactions with chain 7, 1 interactions with chain 8, 1 interactions with chain 6, Hydrophobic interactions: 7:F.30, 7:F.30, 7:H.37, 7:W.46, 7:W.46, 8:L.47, 6:L.44 Metal complexes: 7:H.37 BCL.90: 15 residues within 4Å: Chain 6: L.15, I.24, I.35, V.39 Chain 8: Q.28, I.29, H.36, V.39, W.46 Chain 9: W.29, A.36, H.37 Ligands: CRT.86, BCL.88, BCL.92 16 PLIP interactions: 9 interactions with chain 8, 3 interactions with chain 9, 4 interactions with chain 6, Hydrophobic interactions: 8:Q.28, 8:I.29, 8:V.39, 8:W.46, 8:W.46, 8:W.46, 8:W.46, 8:W.46, 9:W.29, 9:W.29, 6:L.15, 6:I.24, 6:I.35, 6:V.39 Metal complexes: 8:H.36 Hydrogen bonds: 9:H.37 BCL.92: 17 residues within 4Å: Chain 8: Q.28, G.32, I.35, H.36, V.39 Chain 9: F.30, V.33, V.34, H.37, A.40, W.41, W.46, L.47 Chain E: L.47 Ligands: BCL.28, BCL.90, CRT.91 10 PLIP interactions: 7 interactions with chain 9, 2 interactions with chain 8, 1 interactions with chain E, Hydrophobic interactions: 9:V.33, 9:V.34, 9:A.40, 9:W.41, 9:W.46, 9:W.46, 8:V.39, E:L.47 Metal complexes: 9:H.37 Hydrogen bonds: 8:Q.28

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.7: 30 residues within 4Å: Chain B: F.42, T.43, G.46, I.98, C.101, A.102, A.105, F.106, W.109, E.113, V.126, A.129, F.130, F.132, A.133, Y.137, Y.157, G.158, I.159, H.162, A.246, A.250 Chain C: Y.210, A.213, L.214, M.218, W.252 Ligands: BCL.6, BCL.14, MQ8.17 20 PLIP interactions: 18 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:T.43, B:A.102, B:A.102, B:F.106, B:A.129, B:F.130, B:F.130, B:F.130, B:F.132, B:A.133, B:Y.137, B:Y.157, B:Y.157, B:Y.157, B:Y.157, B:I.159, B:A.250, C:A.213, C:L.214 Hydrogen bonds: B:E.113 BPH.16: 21 residues within 4Å: Chain B: F.190, C.193, L.194, S.197, M.198 Chain C: S.60, G.64, L.65, S.125, I.126, W.129, L.146, A.149, F.150, A.153, A.273, V.274, V.277 Chain S: A.26 Ligands: BCL.8, BCL.15 11 PLIP interactions: 9 interactions with chain C, 1 interactions with chain S, 1 interactions with chain B Hydrophobic interactions: C:A.149, C:F.150, C:F.150, C:F.150, C:F.150, C:F.150, C:A.153, C:A.273, C:V.277, S:A.26, B:L.194

1 x UQ8: Ubiquinone-8(Non-covalent)

UQ8.9: 22 residues within 4Å: Chain B: F.132, T.191, M.198, H.199, L.202, I.203, E.221, N.222, F.225, S.232, I.233, G.234, A.235, I.238, R.240, L.241, F.244, S.248, F.251, W.252 Chain D: E.176 Ligands: BCL.8 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.132, B:T.191, B:M.198, B:L.202, B:F.225, B:F.225, B:I.233, B:I.238, B:F.244, B:F.244, B:F.251, B:F.251 Hydrogen bonds: B:I.233, B:G.234

8 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.10: 4 residues within 4Å: Chain B: L.17, V.114, R.118, F.124 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.118 Salt bridges: B:R.118 PEF.20: 6 residues within 4Å: Chain C: Y.4, Q.5, N.6, I.7, F.8 Ligands: PEF.21 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.5, C:N.6, C:I.7, C:F.8 PEF.21: 5 residues within 4Å: Chain C: F.8, W.39, K.42 Chain D: K.204 Ligands: PEF.20 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Salt bridges: C:K.42, C:K.42, C:K.42, D:K.204 PEF.22: 13 residues within 4Å: Chain B: F.30 Chain C: R.253, M.256, G.257, F.258 Chain D: R.31, K.35, Y.39, L.41, V.56, G.57, F.58 Ligands: PEF.27 10 PLIP interactions: 7 interactions with chain D, 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: D:R.31, D:Y.39, D:Y.39, D:F.58, D:F.58, C:R.253, C:R.253 Salt bridges: D:R.31, D:K.35 Hydrophobic interactions: B:F.30 PEF.23: 16 residues within 4Å: Chain D: R.45, V.53, V.55, V.56, G.57 Chain E: I.14, L.15, D.16, R.19, V.20 Chain G: R.18, R.19, V.22 Ligands: PEF.25, PEF.27, BCL.32 10 PLIP interactions: 6 interactions with chain D, 3 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: D:V.53, E:L.15, E:R.19, E:V.20, G:R.18 Hydrogen bonds: D:K.54, D:V.56, D:G.57 Salt bridges: D:R.45, D:R.45 PEF.25: 10 residues within 4Å: Chain D: S.49, G.50, G.51, R.52, V.53, K.54 Chain G: D.16 Chain H: T.8, G.9 Ligands: PEF.23 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:R.52 Hydrogen bonds: D:S.49, D:R.52, D:K.54 Salt bridges: D:K.54 PEF.26: 8 residues within 4Å: Chain B: N.208, P.209 Chain C: S.143, H.145, R.267, W.271 Chain D: Y.29, E.33 7 PLIP interactions: 5 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: C:R.267, D:Y.29 Hydrogen bonds: C:S.143, B:P.209 Salt bridges: C:H.145, C:R.267, C:R.267 PEF.27: 7 residues within 4Å: Chain B: A.2, G.28 Chain D: V.55 Chain E: R.18, R.19 Ligands: PEF.22, PEF.23 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain B Salt bridges: E:R.18, E:R.19, E:R.19 Hydrogen bonds: B:A.2, B:A.2

1 x FE: FE (III) ION(Non-covalent)

FE.13: 5 residues within 4Å: Chain B: H.199, H.239 Chain C: H.219, E.234, H.266 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain B Metal complexes: C:H.219, C:E.234, C:E.234, C:H.266, B:H.239

1 x MQ8: MENAQUINONE 8(Non-covalent)

MQ8.17: 20 residues within 4Å: Chain 8: F.27 Chain B: F.40, L.44, W.109 Chain C: L.215, M.218, H.219, T.222, A.245, A.248, A.249, W.252, M.256, F.258, N.259, V.260, T.261, M.262, I.265 Ligands: BPH.7 15 PLIP interactions: 10 interactions with chain C, 4 interactions with chain B, 1 interactions with chain 8 Hydrophobic interactions: C:L.215, C:T.222, C:A.248, C:A.249, C:W.252, C:M.256, C:F.258, C:V.260, C:I.265, B:F.40, B:L.44, B:W.109, B:W.109, 8:F.27 Hydrogen bonds: C:V.260

17 x CRT: SPIRILLOXANTHIN(Non-covalent)

CRT.18: 20 residues within 4Å: Chain C: I.68, I.71, G.72, G.119, L.120, T.123, Y.157, G.161, F.162, W.171, V.175, F.177, G.178, H.182 Chain O: L.34, M.37, I.38, S.41 Ligands: BCL.8, BCL.15 14 PLIP interactions: 12 interactions with chain C, 2 interactions with chain O Hydrophobic interactions: C:I.68, C:I.71, C:L.120, C:L.120, C:T.123, C:Y.157, C:F.162, C:F.162, C:W.171, C:V.175, C:F.177, C:H.182, O:L.34, O:I.38 CRT.35: 28 residues within 4Å: Chain E: K.10, I.11, L.13, I.14 Chain G: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain H: E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain I: G.32, L.33, H.36, M.37, L.40 Ligands: BCL.33, BCL.36 24 PLIP interactions: 12 interactions with chain H, 6 interactions with chain G, 3 interactions with chain I, 3 interactions with chain E Hydrophobic interactions: H:E.14, H:E.17, H:F.18, H:F.18, H:I.21, H:I.21, H:I.21, H:F.22, H:F.22, H:M.26, H:W.29, H:F.30, G:L.21, G:I.24, G:F.27, G:F.27, G:L.34, G:I.35, I:L.33, I:H.36, I:L.40, E:K.10, E:K.10, E:I.14 CRT.38: 22 residues within 4Å: Chain G: N.7, I.11 Chain I: L.21, I.24, F.27, L.31, L.34, I.35, I.38 Chain J: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain K: L.33, H.36, M.37 Ligands: BCL.39, BCL.40 17 PLIP interactions: 5 interactions with chain I, 11 interactions with chain J, 1 interactions with chain G Hydrophobic interactions: I:L.21, I:I.24, I:F.27, I:L.31, I:I.35, J:L.10, J:E.14, J:F.18, J:F.18, J:I.21, J:I.21, J:F.22, J:F.22, J:F.22, J:F.22, J:M.26, G:I.11 CRT.41: 24 residues within 4Å: Chain I: K.10, I.11, L.13, I.14 Chain K: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain L: E.17, F.18, I.21, F.22, S.25, M.26 Chain M: I.29, L.33, H.36, M.37 Ligands: BCL.42, BCL.44 18 PLIP interactions: 6 interactions with chain L, 10 interactions with chain K, 2 interactions with chain I Hydrophobic interactions: L:F.18, L:F.18, L:I.21, L:F.22, L:F.22, L:M.26, K:L.21, K:L.21, K:I.24, K:I.24, K:F.27, K:F.27, K:Q.28, K:L.31, K:L.34, K:I.35, I:I.14, I:I.14 CRT.47: 25 residues within 4Å: Chain K: L.8, K.10, I.11, L.13, I.14 Chain M: L.21, I.24, F.27, Q.28, L.34, I.35 Chain N: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain O: I.29, L.33, H.36 Ligands: BCL.44, BCL.46, BCL.50 17 PLIP interactions: 4 interactions with chain K, 6 interactions with chain M, 6 interactions with chain N, 1 interactions with chain O Hydrophobic interactions: K:L.8, K:K.10, K:K.10, K:I.14, M:L.21, M:I.24, M:F.27, M:F.27, M:L.34, M:I.35, N:F.18, N:F.18, N:I.21, N:I.21, N:M.26, N:F.30, O:L.33 CRT.51: 25 residues within 4Å: Chain M: L.8, I.11, I.14 Chain O: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain P: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain Q: L.33, H.36, M.37, L.40 Ligands: BCL.48, BCL.52 20 PLIP interactions: 8 interactions with chain P, 8 interactions with chain O, 2 interactions with chain Q, 2 interactions with chain M Hydrophobic interactions: P:E.17, P:F.18, P:I.21, P:I.21, P:F.22, P:F.22, P:M.26, P:F.30, O:L.21, O:L.21, O:I.24, O:F.27, O:F.27, O:L.31, O:L.34, O:I.35, Q:H.36, Q:L.40, M:L.8, M:I.14 CRT.54: 23 residues within 4Å: Chain O: K.10, I.11, I.14 Chain Q: L.21, I.24, F.27, Q.28, L.31, L.34, I.35 Chain R: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain S: I.29, L.33, H.36 Ligands: BCL.52, BCL.55, BCL.57 20 PLIP interactions: 9 interactions with chain Q, 8 interactions with chain R, 1 interactions with chain S, 2 interactions with chain O Hydrophobic interactions: Q:L.21, Q:I.24, Q:I.24, Q:F.27, Q:F.27, Q:Q.28, Q:L.31, Q:L.34, Q:I.35, R:F.18, R:F.18, R:F.18, R:I.21, R:I.21, R:F.22, R:F.22, R:M.26, S:L.33, O:K.10, O:I.11 CRT.59: 28 residues within 4Å: Chain Q: N.7, L.8, K.10, I.11, I.14 Chain S: L.21, I.24, F.27, Q.28, L.31, L.34, I.35 Chain T: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain U: L.33, H.36, M.37 Ligands: BCL.57, BCL.60, BCL.61 18 PLIP interactions: 7 interactions with chain S, 9 interactions with chain T, 1 interactions with chain Q, 1 interactions with chain U Hydrophobic interactions: S:L.21, S:I.24, S:F.27, S:F.27, S:L.31, S:L.34, S:I.35, T:E.14, T:E.17, T:F.18, T:I.21, T:I.21, T:F.22, T:F.22, T:M.26, T:F.30, Q:I.14, U:L.33 CRT.63: 28 residues within 4Å: Chain C: F.84 Chain S: N.7, L.8, K.10, I.11, I.14 Chain U: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain V: E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain W: L.33, H.36 Ligands: BCL.61, BCL.64, BCL.65 17 PLIP interactions: 8 interactions with chain V, 7 interactions with chain U, 1 interactions with chain W, 1 interactions with chain S Hydrophobic interactions: V:F.18, V:F.18, V:I.21, V:I.21, V:F.22, V:M.26, V:W.29, V:F.30, U:L.21, U:I.24, U:F.27, U:F.27, U:L.31, U:L.34, U:I.35, W:H.36, S:I.14 CRT.67: 25 residues within 4Å: Chain U: K.10, I.11, I.14 Chain W: L.21, I.24, F.27, Q.28, L.31, I.35, I.38 Chain X: L.10, E.14, A.15, E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain Y: L.33, H.36, M.37 Ligands: BCL.68, BCL.69 25 PLIP interactions: 7 interactions with chain W, 13 interactions with chain X, 4 interactions with chain U, 1 interactions with chain Y Hydrophobic interactions: W:I.24, W:F.27, W:F.27, W:L.31, W:L.31, W:I.35, W:I.38, X:E.14, X:A.15, X:E.17, X:E.17, X:F.18, X:F.18, X:I.21, X:I.21, X:I.21, X:F.22, X:M.26, X:F.30, X:F.30, U:K.10, U:I.11, U:I.11, U:I.14, Y:H.36 CRT.71: 24 residues within 4Å: Chain 0: L.33, H.36, L.40 Chain W: K.10, I.11, I.14 Chain Y: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain Z: L.10, E.14, F.18, I.21, F.22, S.25, M.26, W.29 Ligands: BCL.72, BCL.73 15 PLIP interactions: 7 interactions with chain Z, 7 interactions with chain Y, 1 interactions with chain W Hydrophobic interactions: Z:F.18, Z:F.18, Z:I.21, Z:I.21, Z:F.22, Z:M.26, Z:W.29, Y:L.21, Y:I.24, Y:F.27, Y:L.31, Y:L.34, Y:I.35, Y:I.38, W:I.14 CRT.75: 22 residues within 4Å: Chain 0: I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain 1: L.10, E.14, F.18, I.21, F.22, S.25, M.26 Chain 2: L.33, H.36 Chain Y: N.7, K.10, I.11, I.14 Ligands: BCL.76, BCL.77 19 PLIP interactions: 7 interactions with chain 0, 9 interactions with chain 1, 1 interactions with chain 2, 2 interactions with chain Y Hydrophobic interactions: 0:I.24, 0:F.27, 0:F.27, 0:L.31, 0:L.34, 0:I.35, 0:I.38, 1:E.14, 1:F.18, 1:F.18, 1:I.21, 1:I.21, 1:F.22, 1:F.22, 1:F.22, 1:M.26, 2:L.33, Y:K.10, Y:I.11 CRT.79: 23 residues within 4Å: Chain 0: K.10, I.11, L.13, I.14 Chain 2: L.21, I.24, F.27, Q.28, L.31, L.34, I.38 Chain 3: E.14, F.18, I.21, F.22, S.25, M.26 Chain 4: G.32, L.33, H.36 Ligands: BCL.77, BCL.80, BCL.81 15 PLIP interactions: 7 interactions with chain 3, 5 interactions with chain 2, 3 interactions with chain 0 Hydrophobic interactions: 3:F.18, 3:F.18, 3:I.21, 3:I.21, 3:F.22, 3:F.22, 3:M.26, 2:L.21, 2:I.24, 2:F.27, 2:L.31, 2:L.34, 0:K.10, 0:L.13, 0:I.14 CRT.84: 23 residues within 4Å: Chain 2: N.7, L.8, K.10, I.11, L.13, I.14 Chain 4: I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain 5: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain 6: L.33, H.36 Ligands: BCL.85 15 PLIP interactions: 4 interactions with chain 5, 7 interactions with chain 4, 4 interactions with chain 2 Hydrophobic interactions: 5:E.14, 5:I.21, 5:I.21, 5:M.26, 4:I.24, 4:F.27, 4:F.27, 4:L.31, 4:L.31, 4:L.34, 4:I.35, 2:L.8, 2:K.10, 2:I.11, 2:I.14 CRT.86: 23 residues within 4Å: Chain 4: L.8, K.10, I.11, I.14 Chain 6: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain 7: F.18, I.21, F.22, S.25, M.26, W.29 Chain 8: L.33, H.36, M.37 Ligands: BCL.88, BCL.90 18 PLIP interactions: 8 interactions with chain 7, 3 interactions with chain 4, 7 interactions with chain 6 Hydrophobic interactions: 7:F.18, 7:F.18, 7:I.21, 7:I.21, 7:F.22, 7:F.22, 7:M.26, 7:W.29, 4:K.10, 4:K.10, 4:I.11, 6:L.21, 6:L.21, 6:I.24, 6:F.27, 6:F.27, 6:L.31, 6:L.34 CRT.89: 29 residues within 4Å: Chain 8: F.2, T.3, K.10, I.11, I.14 Chain E: L.21, I.24, F.27, Q.28, L.31, L.34, I.35, I.38 Chain F: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30 Chain G: I.29, L.33, H.36, M.37 Ligands: BCL.29, BCL.32 24 PLIP interactions: 11 interactions with chain F, 4 interactions with chain 8, 9 interactions with chain E Hydrophobic interactions: F:E.17, F:F.18, F:F.18, F:F.18, F:I.21, F:I.21, F:F.22, F:F.22, F:F.22, F:M.26, F:F.30, 8:T.3, 8:K.10, 8:I.11, 8:I.14, E:L.21, E:L.21, E:I.24, E:I.24, E:F.27, E:L.31, E:L.31, E:L.34, E:I.35 CRT.91: 21 residues within 4Å: Chain 6: I.11, I.14 Chain 8: I.24, F.27, Q.28, L.31, L.34, I.35 Chain 9: E.14, E.17, F.18, I.21, F.22, S.25, M.26 Chain E: I.29, L.33, H.36, M.37 Ligands: BCL.28, BCL.92 16 PLIP interactions: 5 interactions with chain 9, 6 interactions with chain 8, 2 interactions with chain 6, 3 interactions with chain E Hydrophobic interactions: 9:E.17, 9:I.21, 9:I.21, 9:I.21, 9:M.26, 8:I.24, 8:F.27, 8:F.27, 8:L.31, 8:L.34, 8:I.35, 6:I.11, 6:I.14, E:I.29, E:L.33, E:H.36

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.19: 8 residues within 4Å: Chain C: G.26, Y.52, G.54, L.55, T.56, K.135, R.136 Chain O: R.19 7 PLIP interactions: 1 interactions with chain O, 6 interactions with chain C Salt bridges: O:R.19, C:K.135 Hydrogen bonds: C:Y.52, C:L.55, C:T.56, C:T.56, C:R.136 PO4.24: 4 residues within 4Å: Chain C: H.301 Chain D: Y.8, Q.13, W.17 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Y.8, D:Q.13

1 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)

PGW.56: 6 residues within 4Å: Chain C: I.31, G.32, R.33, I.35 Chain S: R.18, R.19 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain S Hydrophobic interactions: C:I.35 Hydrogen bonds: C:G.32, S:R.18, S:R.18 Salt bridges: C:R.33, S:R.19, S:R.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, L.J. et al., Structural Basis for the Unusual Qy Red-Shift and Enhanced Thermostability of the LH1 Complex from Thermochromatium tepidum. Biochemistry (2016)

Release Date

2017-03-22

Peptides

Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center L subunit: B
Photosynthetic reaction center M subunit: C
Photosynthetic reaction center H subunit: D
LH1 alpha polypeptide: EGIKMOQSUWY02468
LH1 beta polypeptide: FHJLNPRTVXZ13579

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
L

C
M

D
H

E
A

G
D

I
F

K
I

M
K

O
O

Q
Q

S
S

U
U

W
W

Y
Y

0
1

2
3

4
5

6
7

8
9

F
B

H
E

J
G

L
J

N
N

P
P

R
R

T
T

V
V

X
X

Z
Z

1
2

3
4

5
6

7
8

9
0

Membrane

We predict this structure to be a membrane protein.
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Photosynthetic reaction center cytochrome c subunit

Photosynthetic reaction center L subunit

Photosynthetic reaction center M subunit

Photosynthetic reaction center H subunit

LH1 alpha polypeptide

LH1 beta polypeptide

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