- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 15 x GOL: GLYCEROL(Non-functional Binders)
- 5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.8: 3 residues within 4Å:- Chain A: K.290
- Ligands: DMS.9, DMS.11
No protein-ligand interaction detected (PLIP)DMS.9: 6 residues within 4Å:- Chain A: E.161, K.286, D.287, L.289, K.290
- Ligands: DMS.8
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:E.161
DMS.10: 6 residues within 4Å:- Chain A: F.139, T.141, P.214, K.290, Y.295
- Ligands: DMS.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.295
DMS.11: 5 residues within 4Å:- Chain A: A.208, G.212, L.213
- Ligands: DMS.8, DMS.10
No protein-ligand interaction detected (PLIP)DMS.12: 4 residues within 4Å:- Chain A: K.85, F.88, E.89, I.95
No protein-ligand interaction detected (PLIP)- 1 x MET: METHIONINE(Non-covalent)
MET.14: 14 residues within 4Å:- Chain A: P.16, I.17, Y.18, Y.19, D.56, W.243, A.246, L.247, N.249, Y.250, I.288, H.292, T.318, K.319
7 PLIP interactions:6 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:W.243
- Hydrogen bonds: A:I.17, A:Y.19, A:D.56, A:T.318, M.14
- Salt bridges: A:K.319
- 1 x SO4: SULFATE ION(Non-functional Binders)
- 1 x 0P5: 4-{4-[(1H-benzimidazol-2-ylmethyl)amino]-6-(2-chloro-4-methoxyphenoxy)pyrimidin-2-yl}piperazin-2-one(Non-covalent)
0P5.20: 19 residues within 4Å:- Chain B: P.16, I.17, Y.19, D.56, H.58, G.59, L.225, V.240, Y.241, V.242, W.243, D.245, A.246, N.249, Y.250, I.288, F.291, H.292
- Ligands: GOL.23
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:P.16, B:H.58, B:L.225, B:Y.241, B:V.242, B:V.242, B:A.246, B:I.288
- Hydrogen bonds: B:I.17, B:Y.19, B:D.56
- Water bridges: B:D.56, B:Y.241
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koh, C.Y. et al., Distinct States of Methionyl-tRNA Synthetase Indicate Inhibitor Binding by Conformational Selection. Structure (2012)
- Release Date
- 2012-09-12
- Peptides
- Methionyl-tRNA synthetase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4eg6.3 (2 other biounits)
Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor Chem 1325
Methionyl-tRNA synthetase, putative
Related Entries With Identical Sequence
4eg1.1 | 4eg1.2 | 4eg3.1 | 4eg3.2 | 4eg4.1 | 4eg4.2 | 4eg5.1 | 4eg5.2 | 4eg6.1 | 4eg6.2 | 4eg7.1 | 4eg7.2 | 4eg8.1 | 4eg8.2 | 4ega.1 | 4ega.2 | 4mvw.1 | 4mvw.2 | 4mvx.1 | 4mvx.2 | 4mvy.1 | 4mvy.2 | 4mw0.1 | 4mw0.2 | 4mw1.1 | 4mw1.2 | 4mw2.1 | 4mw2.2 | 4mw4.1 | 4mw4.2 more...less...4mw5.1 | 4mw5.2 | 4mw6.1 | 4mw6.2 | 4mw7.1 | 4mw7.2 | 4mw9.1 | 4mw9.2 | 4mwb.1 | 4mwb.2 | 4mwc.1 | 4mwc.2 | 4mwd.1 | 4mwd.2 | 4mwe.1 | 4mwe.2 | 4zt2.1 | 4zt2.2 | 4zt3.1 | 4zt3.2 | 4zt4.1 | 4zt4.2 | 4zt5.1 | 4zt5.2 | 4zt6.1 | 4zt6.2 | 4zt7.1 | 4zt7.2 | 5j58.1 | 5j58.2 | 5j59.1 | 5j59.2 | 5j5a.1 | 5j5a.2 | 5tqu.1 | 5tqu.2 | 5tqu.3 | 5v49.1 | 5v49.2 | 6cml.1 | 6cml.2 | 6mes.1 | 6mes.2