SMTL ID : 5j58.1 (1 other biounit)

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1856)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MET: METHIONINE(Non-covalent)

MET.1: 14 residues within 4Å: Chain A: P.16, I.17, Y.18, Y.19, D.56, W.243, A.246, L.247, N.249, Y.250, I.288, H.292, T.318, K.319 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:W.243, A:I.288 Hydrogen bonds: A:I.17, A:Y.19, A:D.56, M.1 Salt bridges: A:K.319

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: R.352, R.370 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.352, A:R.352, A:R.370, A:R.370 GOL.3: 9 residues within 4Å: Chain A: Y.30, L.351, S.354, G.355, F.356, P.428, D.429, I.430, Q.431 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.30, A:L.351

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 4 residues within 4Å: Chain A: E.204, A.208, K.290 Ligands: DMS.5 No protein-ligand interaction detected (PLIP) DMS.5: 7 residues within 4Å: Chain A: E.161, K.286, D.287, I.288, L.289, K.290 Ligands: DMS.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, W. et al., Structure-guided design of novel Trypanosoma brucei Methionyl-tRNA synthetase inhibitors. Eur J Med Chem (2016)

Release Date

2017-01-25

Peptides

Methionyl-tRNA synthetase, putative: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionyl-tRNA synthetase, putative

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