SMTL ID : 5j59.2 (1 other biounit)

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1893)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.352, R.370 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.352, A:R.352, A:R.370, A:R.370

1 x N93: 5-chloro-N-(2-{[(3,5-dichlorophenyl)methyl]amino}ethyl)-N-methyl-3H-imidazo[4,5-b]pyridin-2-amine(Non-covalent)

N93.2: 16 residues within 4Å: Chain A: I.17, Y.19, D.56, H.58, G.59, L.225, V.240, Y.241, V.242, W.243, D.245, A.246, Y.250, I.288, F.291, H.292 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.58, A:V.242, A:A.246, A:F.291 Hydrogen bonds: A:D.56 Water bridges: A:Y.19 Halogen bonds: A:Y.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, W. et al., Structure-guided design of novel Trypanosoma brucei Methionyl-tRNA synthetase inhibitors. Eur J Med Chem (2016)

Release Date

2017-01-25

Peptides

Methionyl-tRNA synthetase, putative: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Methionyl-tRNA synthetase, putative

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