SMTL ID : 6mes.2 (1 other biounit)

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1907)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x JFA: 1-[(1H-benzimidazol-2-yl)methyl]-4-[(2,4-dichlorophenyl)methyl]-1,3-dihydro-2H-imidazol-2-one(Non-covalent)

JFA.1: 15 residues within 4Å: Chain A: I.17, Y.19, D.56, H.58, G.59, V.242, W.243, D.245, A.246, L.247, N.249, Y.250, I.288, F.291, H.292 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.58, A:V.242, A:A.246, A:L.247, A:I.288, A:I.288, A:F.291 Water bridges: A:Y.19, A:K.61 Halogen bonds: A:N.249, A:Y.250

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: R.352, R.370 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.352, A:R.352, A:R.370, A:R.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Structure-guided discovery of selective methionyl-tRNA synthetase inhibitors with potent activity against Trypanosoma brucei. Rsc Med Chem (2020)

Release Date

2019-09-18

Peptides

Methionyl-tRNA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Methionyl-tRNA synthetase

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