SMTL ID : 6cml.2 (1 other biounit)

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 2093)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x 96S: 1-[(5-chloro-1H-imidazo[4,5-b]pyridin-2-yl)methyl]-4-[(2-chloro-4-methoxyphenyl)methyl]-3-ethyl-1,3-dihydro-2H-imidazol-2-one(Non-covalent)

96S.1: 17 residues within 4Å: Chain A: I.17, Y.19, D.56, H.58, G.59, L.225, V.240, Y.241, V.242, W.243, D.245, A.246, N.249, Y.250, I.288, F.291, H.292 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.58, A:V.242, A:A.246, A:I.288, A:F.291, A:F.291 Hydrogen bonds: A:I.17, A:D.56 Water bridges: A:Y.19

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: R.352, R.370 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.352, A:R.370, A:R.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Structure-guided discovery of selective methionyl-tRNA synthetase inhibitors with potent activity against Trypanosoma brucei. Rsc Med Chem (2020)

Release Date

2019-03-13

Peptides

Methionyl-tRNA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Methionyl-tRNA synthetase

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