SMTL ID : 5j58.2 (1 other biounit)

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1856)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.352, R.370 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.352, A:R.370, A:R.370

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: F.88, E.89, Y.93, S.94, I.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.95

1 x N56: (3S)-1-(5-chloro-1H-imidazo[4,5-b]pyridin-2-yl)-N-[(3,5-dichlorophenyl)methyl]piperidin-3-amine(Non-covalent)

N56.3: 17 residues within 4Å: Chain A: I.17, Y.19, D.56, H.58, G.59, L.225, V.240, Y.241, V.242, W.243, D.245, A.246, L.247, Y.250, I.288, F.291, H.292 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.58, A:V.242, A:V.242, A:A.246, A:L.247, A:F.291 Hydrogen bonds: A:D.56, A:D.56, A:D.56, A:V.242 Water bridges: A:Q.60, A:Q.60 Halogen bonds: A:Y.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, W. et al., Structure-guided design of novel Trypanosoma brucei Methionyl-tRNA synthetase inhibitors. Eur J Med Chem (2016)

Release Date

2017-01-25

Peptides

Methionyl-tRNA synthetase, putative: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Methionyl-tRNA synthetase, putative

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