SMTL ID : 4ek4.1

Crystal structure of the cdk2 in complex with aminopyrazole inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

1 x 1CK: 4-BROMO-N-(5-METHYL-1H-PYRAZOL-3-YL)BENZAMIDE(Non-covalent)

1CK.1: 12 residues within 4Å: Chain A: I.11, A.32, K.34, F.81, E.82, F.83, L.84, H.85, Q.86, D.87, K.90, L.135 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.11, A:F.81, A:F.83, A:L.135 Hydrogen bonds: A:L.84, A:L.84 Water bridges: A:D.87

5 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: K.89, Y.169, E.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.196 Water bridges: A:E.196 NA.3: 1 residues within 4Å: Chain A: E.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.209 Water bridges: A:E.209, A:E.209 NA.4: 3 residues within 4Å: Chain A: K.106, D.257, F.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.106 Water bridges: A:K.106, A:D.257 NA.5: 3 residues within 4Å: Chain A: L.68, D.69, V.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.69, A:D.69 NA.6: 3 residues within 4Å: Chain A: K.57, D.69, V.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.57, A:D.69, A:V.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal structure of the cdk2 in complex with aminopyrazole inhibitor. To be Published

Release Date

2013-05-01

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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