SMTL ID : 4f2k.1

Macrophage Migration Inhibitory Factor covalently complexed with phenethylisothiocyanate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-trimer

Ligands

3 x LE2: N-(2-phenylethyl)thioformamide(Covalent)

LE2.1: 11 residues within 4Å: Chain A: P.1, M.2, K.32, Y.36, H.62, S.63, I.64, V.106, F.113 Chain C: Y.95, N.97 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:H.62, A:I.64, A:V.106, A:V.106, A:F.113 Hydrogen bonds: A:P.1 pi-Stacking: C:Y.95 LE2.4: 10 residues within 4Å: Chain A: Y.95, N.97 Chain B: P.1, M.2, K.32, Y.36, H.62, S.63, I.64, V.106 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:H.62, B:I.64, B:V.106, B:V.106 Hydrogen bonds: B:P.1 pi-Stacking: A:Y.95 LE2.8: 10 residues within 4Å: Chain B: Y.95, N.97 Chain C: P.1, M.2, K.32, Y.36, H.62, S.63, I.64, V.106 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain C pi-Stacking: B:Y.95 Hydrophobic interactions: C:H.62, C:I.64, C:V.106 Hydrogen bonds: C:P.1 Water bridges: C:K.32

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.86 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.86 SO4.5: 2 residues within 4Å: Chain B: A.70, R.73 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.73 SO4.9: 1 residues within 4Å: Chain C: R.86 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.86 SO4.10: 2 residues within 4Å: Chain C: A.70, R.73 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.73

4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.70 Hydrogen bonds: A:A.70, A:Q.71, A:Q.71 IPA.6: 3 residues within 4Å: Chain B: Q.35, Y.36, W.108 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.36 Water bridges: A:D.92 IPA.7: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:A.70, B:Q.71 Hydrogen bonds: B:G.68, B:A.70, B:Q.71, B:Q.71 IPA.11: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.68, C:A.70, C:Q.71, C:Q.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tyndall, J.D.A. et al., Macrophage migration inhibitory factor covalently complexed with phenethyl isothiocyanate. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-06-06

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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