SMTL ID : 4fae.1

Substrate p2/NC in Complex with a Human Immunodeficiency Virus Type 1 Protease Variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x THR- ILE- MET- MET- GLN- ARG- GLY: Substrate p2/NC peptide(Non-covalent)

THR-ILE-MET-MET-GLN-ARG-GLY.1: 28 residues within 4Å: Chain A: R.8, N.25, G.27, A.28, D.29, D.30, K.45, I.47, G.48, G.49, I.50, T.80, P.81, V.84 Chain B: R.8, N.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, T.80, T.82, V.84 26 PLIP interactions: 12 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:D.30, B:V.32, B:I.47, B:I.50, A:A.28, A:P.81 Hydrogen bonds: B:N.25, B:G.27, B:D.29, B:D.29, B:G.48, A:R.8, A:N.25, A:G.27, A:D.29, A:D.29, A:D.29, A:D.30, A:D.30, A:G.48, A:G.48 Water bridges: B:D.29, B:G.48, B:I.50, A:I.50 Salt bridges: A:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Higher Desolvation Energy Reduces Molecular Recognition in Multi-Drug Resistant HIV-1 Protease. Biology (Basel) (2012)

Release Date

2012-08-29

Peptides

HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 protease

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