SMTL ID : 4fku.1

Crystal structure of the cdk2 in complex with oxindole inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

2 x 60K: (3Z)-2-oxo-3-[2-(4-sulfamoylphenyl)hydrazinylidene]-2,3-dihydro-1H-indole-5-carboxylic acid(Non-covalent)

60K.1: 3 residues within 4Å: Chain A: L.26, T.27, E.29 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.26, A:L.26 60K.3: 16 residues within 4Å: Chain A: I.11, V.19, A.32, K.34, V.65, F.81, E.82, F.83, L.84, H.85, Q.86, D.87, K.90, L.135, A.145, D.146 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.19, A:V.65, A:F.81, A:F.81, A:D.87, A:L.135, A:A.145 Hydrogen bonds: A:E.82, A:L.84, A:L.84, A:D.87, A:D.87, A:K.90, A:D.146, A:D.146 Water bridges: A:K.34, A:K.34, A:K.34, A:Q.86 Salt bridges: A:K.34

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.249, E.258, R.261, S.262, S.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal structure of the cdk2 in complex with oxindole inhibitor. To be Published

Release Date

2013-05-08

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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