SMTL ID : 4fkw.1

Crystal structure of the cdk2 in complex with oxindole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 62K: 2-methylpropyl (3Z)-2-oxo-3-[2-(4-sulfamoylphenyl)hydrazinylidene]-2,3-dihydro-1H-indole-5-carboxylate(Non-covalent)

62K.1: 19 residues within 4Å: Chain A: I.11, G.12, E.13, G.14, V.19, A.32, K.34, V.65, F.81, E.82, F.83, L.84, H.85, Q.86, D.87, K.90, Q.132, L.135, D.146 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.19, A:V.19, A:F.81, A:F.81, A:D.87, A:L.135, A:L.135 Hydrogen bonds: A:E.82, A:L.84, A:L.84, A:D.87, A:K.90 Salt bridges: A:K.34

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: N.137, T.138, E.139 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.138, A:E.139, A:E.139, A:E.139 Water bridges: A:H.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal structure of the cdk2 in complex with oxindole inhibitor. To be Published

Release Date

2013-05-08

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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