SMTL ID : 4ft2.1

crystal structure of Zea mays ZMET2 in complex H3(1-15)K9me2 peptide and SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-1-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: Y.219, S.220, G.221, C.222, G.223, G.224, M.225, D.247, F.248, N.249, E.268, K.269, A.270, G.386, P.388, Q.412, N.723, A.724, V.725 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.219, A:C.222, A:G.223, A:G.224, A:M.225, A:F.248, A:N.249, A:A.270, A:N.723, A:V.725 SAH.2: 19 residues within 4Å: Chain B: Y.219, S.220, G.221, C.222, G.223, G.224, M.225, D.247, F.248, N.249, E.268, K.269, A.270, P.388, Q.412, E.431, N.723, A.724, V.725 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:N.723 Hydrogen bonds: B:Y.219, B:G.221, B:G.223, B:G.224, B:M.225, B:F.248, B:N.249, B:A.270, B:Q.412, B:V.725

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, J. et al., Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.) (2012)

Release Date

2012-10-17

Peptides

DNA (cytosine-5)-methyltransferase 1: AB
H3 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

DNA (cytosine-5)-methyltransferase 1

H3 peptide

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