SMTL ID : 4gqb.1

Crystal Structure of the human PRMT5:MEP50 Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

hetero-oligomer

Ligands

4 x 0XU: (2S,5S,6E)-2,5-DIAMINO-6-[(3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYDIHYDROFURAN-2(3H)-YLIDENE]HEXANOIC ACID(Non-covalent)

0XU.1: 23 residues within 4Å: Chain A: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, P.370, L.371, E.392, K.393, N.394, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 Chain C: R.4 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.327, A:F.327, A:L.436 Hydrogen bonds: A:Y.324, A:Y.324, A:G.365, A:G.367, A:K.393, A:D.419, A:M.420, A:E.435, A:E.435 Water bridges: A:N.394, A:E.435, A:E.444 Salt bridges: A:K.333 pi-Cation interactions: A:K.393 0XU.2: 23 residues within 4Å: Chain D: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, P.370, L.371, E.392, K.393, N.394, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 Chain F: R.4 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:F.327, D:F.327, D:L.436 Hydrogen bonds: D:Y.324, D:Y.324, D:G.365, D:G.367, D:K.393, D:D.419, D:M.420, D:E.435, D:E.435 Water bridges: D:N.394, D:E.435, D:E.444 Salt bridges: D:K.333 pi-Cation interactions: D:K.393 0XU.3: 23 residues within 4Å: Chain G: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, P.370, L.371, E.392, K.393, N.394, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 Chain I: R.4 15 PLIP interactions: 15 interactions with chain G Hydrophobic interactions: G:F.327, G:F.327, G:L.436 Hydrogen bonds: G:Y.324, G:Y.334, G:G.365, G:G.367, G:K.393, G:D.419, G:M.420, G:E.435 Water bridges: G:N.394, G:E.435 Salt bridges: G:K.333 pi-Cation interactions: G:K.393 0XU.4: 23 residues within 4Å: Chain J: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, P.370, L.371, E.392, K.393, N.394, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 Chain L: R.4 15 PLIP interactions: 15 interactions with chain J Hydrophobic interactions: J:F.327, J:F.327, J:L.436 Hydrogen bonds: J:Y.324, J:Y.334, J:G.365, J:G.367, J:K.393, J:D.419, J:M.420, J:E.435 Water bridges: J:N.394, J:E.435 Salt bridges: J:K.333 pi-Cation interactions: J:K.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antonysamy, S. et al., Crystal structure of the human PRMT5:MEP50 complex. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-10-17

Peptides

Protein arginine N-methyltransferase 5: ADGJ
Methylosome protein 50: BEHK
Histone H4 peptide: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

B
B

E
B

H
B

K
B

C
C

F
C

I
C

L
C

Protein arginine N-methyltransferase 5

Methylosome protein 50

Histone H4 peptide

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