SMTL ID : 4gru.1

crystallographic and biological characterization of N- and C- terminus mutants of human MIF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-trimer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: P.15, G.17, F.18, L.19 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: M.101, N.102, N.105 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: P.1, K.32, S.63, I.64 Ligands: DIO.17 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: A.70, Q.71 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: P.15, D.16 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: M.101, N.102, N.105 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: W.108, S.111, T.112 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: P.1, K.32, S.63, I.64 Ligands: DIO.6 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain C: M.101, N.102, N.105 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain C: P.1, K.32, S.63, I.64 Ligands: DIO.13 Ligand excluded by PLIP

3 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.6: 10 residues within 4Å: Chain A: Y.95, N.97 Chain B: P.1, M.2, H.62, S.63, I.64, M.101, V.106 Ligands: CL.12 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.97, B:P.1 DIO.13: 9 residues within 4Å: Chain B: Y.95, N.97 Chain C: P.1, M.2, H.62, S.63, I.64, V.106 Ligands: CL.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.97 DIO.17: 8 residues within 4Å: Chain A: P.1, M.2, H.62, M.101, V.106 Chain C: Y.95, N.97 Ligands: CL.3 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.97

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 6 residues within 4Å: Chain A: H.62, Y.99 Chain B: H.62, Y.99 Chain C: H.62, Y.99 6 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B, 1 interactions with chain C Water bridges: A:Y.99, B:Y.99 Salt bridges: A:H.62, B:H.62, C:H.62 Hydrogen bonds: B:Y.99 SO4.14: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain C Water bridges: C:S.111, C:S.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, C. et al., crystallographic and biological characterization of N- and C- terminus mutants of human MIF. To be Published

Release Date

2013-09-25

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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