SMTL ID : 4hoc.3 (2 other biounits)

Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-N-acetylglucosamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.1: 20 residues within 4Å: Chain A: L.6, G.8, G.9, Q.80, P.83, D.84, G.85, L.86, L.106, D.108, N.109, R.142, F.143, G.144, E.159, K.160, V.170, G.172, E.196, W.221 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.86, A:L.86 Hydrogen bonds: A:G.8, A:Q.80, A:Q.80, A:G.85, A:N.109, A:N.109, A:G.144, A:E.159, A:E.159, A:G.172 Water bridges: A:G.9, A:G.9, A:R.13, A:D.108, A:V.170, A:Y.174, A:I.197 Salt bridges: A:K.160, A:K.160 UD1.4: 19 residues within 4Å: Chain B: L.6, G.8, G.9, Q.80, P.83, D.84, G.85, L.86, L.106, D.108, N.109, R.142, F.143, G.144, E.159, K.160, V.170, G.172, W.221 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:L.86, B:L.86 Hydrogen bonds: B:G.8, B:Q.80, B:Q.80, B:G.85, B:N.109, B:N.109, B:G.144, B:E.159, B:E.159, B:K.160, B:G.172 Water bridges: B:D.108, B:V.170, B:Y.174, B:I.197 Salt bridges: B:K.160 UD1.7: 20 residues within 4Å: Chain C: L.6, G.8, G.9, Q.80, P.83, D.84, G.85, L.86, L.106, D.108, N.109, R.142, F.143, G.144, E.159, K.160, V.170, G.172, E.196, W.221 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:L.86, C:L.86 Hydrogen bonds: C:G.8, C:Q.80, C:Q.80, C:G.85, C:N.109, C:N.109, C:G.144, C:E.159, C:E.159, C:G.172, C:T.198 Water bridges: C:G.9, C:G.9, C:R.13, C:D.108, C:V.170, C:T.171, C:I.197 Salt bridges: C:K.160, C:K.160 UD1.10: 19 residues within 4Å: Chain D: L.6, G.8, G.9, Q.80, P.83, D.84, G.85, L.86, L.106, D.108, N.109, R.142, F.143, G.144, E.159, K.160, V.170, G.172, W.221 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:L.86, D:L.86 Hydrogen bonds: D:G.8, D:Q.80, D:Q.80, D:G.85, D:N.109, D:N.109, D:G.144, D:E.159, D:E.159, D:K.160, D:G.172, D:T.198 Water bridges: D:D.108, D:V.170, D:T.171, D:I.197 Salt bridges: D:K.160

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.66, G.67, G.68, S.69 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.67, A:G.68, A:S.69, A:S.69, A:S.69 Water bridges: A:E.70, A:E.70 SO4.3: 4 residues within 4Å: Chain A: N.125, R.126, K.127, S.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.127, A:S.128 SO4.5: 4 residues within 4Å: Chain B: G.66, G.67, G.68, S.69 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.67, B:G.68, B:S.69 Water bridges: B:E.70 SO4.6: 4 residues within 4Å: Chain B: N.125, R.126, K.127, S.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.125, B:K.127, B:S.128 SO4.8: 4 residues within 4Å: Chain C: G.66, G.67, G.68, S.69 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.67, C:G.68, C:S.69, C:S.69, C:S.69 Water bridges: C:E.70, C:E.70 SO4.9: 4 residues within 4Å: Chain C: N.125, R.126, K.127, S.128 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.127, C:S.128 SO4.11: 4 residues within 4Å: Chain D: G.66, G.67, G.68, S.69 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.67, D:G.68, D:S.69 Water bridges: D:E.70 SO4.12: 4 residues within 4Å: Chain D: N.125, R.126, K.127, S.128 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.125, D:K.127, D:S.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-N-acetylglucosamine. TO BE PUBLISHED

Release Date

2013-10-23

Peptides

Glucose-1-phosphate thymidylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glucose-1-phosphate thymidylyltransferase

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