SMTL ID : 4hux.1

Crystal Structure of H2Db-H155A-NP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-oligomer

Ligands

1 x ALA- SER- ASN- GLU- ASN- MET- GLU- THR- MET: NP peptide(Non-covalent)

ALA-SER-ASN-GLU-ASN-MET-GLU-THR-MET.1: 26 residues within 4Å: Chain A: Y.7, Y.45, E.63, K.66, G.69, Q.70, W.73, S.77, N.80, L.81, Y.84, L.95, Q.97, F.116, Y.123, I.124, T.143, K.146, W.147, S.150, A.152, A.155, Y.156, Y.159, W.167, Y.171 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:K.66, A:W.73, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:Y.45, A:E.63, A:K.66, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Y.84, A:Q.97, A:Q.97, A:T.143, A:K.146, A:S.150, A:S.150, A:Y.156, A:Y.156, A:Y.159 Water bridges: A:Y.7, A:S.24, A:S.99 Salt bridges: A:K.146

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: A.158, E.161, G.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.158 Water bridges: A:E.161 GOL.3: 9 residues within 4Å: Chain A: F.8, E.9, T.10, I.23, V.25, Y.27 Chain B: M.54, S.55, F.56 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.10, A:I.23, A:Y.27, B:F.56

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain B: Q.2, K.3, T.4 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.4 Hydrogen bonds: B:Q.2, B:T.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valkenburg, S.A. et al., Preemptive priming readily overcomes structure-based mechanisms of virus escape. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-02-27

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

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