SMTL ID : 4kcc.1

Crystal Structure of the NMDA Receptor GluN1 Ligand Binding Domain Apo State

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: F.137, K.139, K.261, S.265 Chain B: F.137, K.139, K.261, S.265 Ligands: PO4.2 12 PLIP interactions: 7 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:F.137, A:F.137 Water bridges: A:F.137, A:K.139, A:K.139, B:F.137, B:K.139, B:K.139 Salt bridges: A:K.139, A:K.261, B:K.139, B:K.261 PO4.2: 9 residues within 4Å: Chain A: F.137, K.139, K.261, S.265 Chain B: F.137, K.139, K.261, S.265 Ligands: PO4.1 12 PLIP interactions: 5 interactions with chain A, 7 interactions with chain B Water bridges: A:F.137, A:K.139, A:K.139, B:F.137, B:K.139, B:K.139 Salt bridges: A:K.139, A:K.261, B:K.139, B:K.261 Hydrogen bonds: B:F.137, B:F.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, Y. et al., Conformational Analysis of NMDA Receptor GluN1, GluN2, and GluN3 Ligand-Binding Domains Reveals Subtype-Specific Characteristics. Structure (2013)

Release Date

2013-07-31

Peptides

Glutamate receptor ionotropic, NMDA 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glutamate receptor ionotropic, NMDA 1

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