SMTL ID : 5u8c.1

CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX WITH GLYCINE AND NVP-AAM077

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:P.124, A:T.126, A:T.126, A:S.180, A:S.180 Water bridges: A:D.224 Salt bridges: A:R.131

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: P.167, S.168, D.169, R.196, H.197, K.200 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.168, A:R.196, A:H.197, A:K.200

1 x 84J: [(R)-{[(1S)-1-(4-bromophenyl)ethyl]amino}(2,3-dihydroxyquinoxalin-5-yl)methyl]phosphonic acid(Non-covalent)

84J.3: 15 residues within 4Å: Chain A: E.273 Chain B: E.13, H.85, S.111, L.112, T.113, N.115, R.118, I.133, G.169, S.170, T.171, Y.211, D.212, Y.242 21 PLIP interactions: 1 interactions with chain A, 20 interactions with chain B Halogen bonds: A:E.273 Hydrophobic interactions: B:T.113, B:I.133, B:Y.211, B:D.212 Hydrogen bonds: B:S.111, B:T.113, B:T.113, B:R.118, B:R.118, B:S.170, B:S.170, B:S.170, B:T.171, B:T.171, B:T.171, B:Y.211 Water bridges: B:H.85, B:E.172, B:Y.211 pi-Stacking: B:H.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romero-Hernandez, A. et al., Novel Mode of Antagonist Binding in NMDA Receptors Revealed by the Crystal Structure of the GluN1-GluN2A Ligand-Binding Domain Complexed to NVP-AAM077. Mol. Pharmacol. (2017)

Release Date

2017-05-17

Peptides

Glutamate receptor ionotropic, NMDA 1: A
GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1

GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A

Related Entries With Identical Sequence