SMTL ID : 6uzg.1

Crystal structure of GLUN1/GLUN2A-4M mutant ligand-binding domain in complex with glycine and homoquinolinic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.126, A:T.126, A:S.180, A:S.180, A:D.224 Water bridges: A:D.224 Salt bridges: A:R.131

1 x QM1: 3-(carboxymethyl)pyridine-2-carboxylic acid(Non-covalent)

QM1.2: 12 residues within 4Å: Chain B: E.12, H.84, S.110, L.111, T.112, R.117, G.168, S.169, T.170, Y.210, D.211, Y.241 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.210, B:Y.210, B:D.211 Hydrogen bonds: B:S.110, B:T.112, B:T.112, B:G.168, B:S.169, B:T.170, B:T.170, B:D.211 Water bridges: B:S.169, B:E.171, B:Y.210, B:D.211 Salt bridges: B:H.84, B:R.117 pi-Stacking: B:H.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J.X. et al., Structural basis of subtype-selective competitive antagonism for GluN2C/2D-containing NMDA receptors. Nat Commun (2020)

Release Date

2020-01-29

Peptides

Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A

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