SMTL ID : 6usu.1

Crystal structure of GluN1/GluN2A ligand-binding domain in complex with L689,560 and glutamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

1 x QGM: (2R,4S)-5,7-dichloro-4-[(phenylcarbamoyl)amino]-1,2,3,4-tetrahydroquinoline-2-carboxylic acid(Non-covalent)

QGM.1: 15 residues within 4Å: Chain A: Q.13, F.16, F.92, P.124, L.125, T.126, R.131, V.176, Q.178, S.179, S.180, W.223, D.224, V.227, F.250 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.124, A:V.176, A:W.223, A:D.224, A:V.227, A:F.250 Hydrogen bonds: A:P.124, A:T.126, A:T.126, A:S.180 Water bridges: A:Q.13, A:R.131 Salt bridges: A:R.131

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.2: 10 residues within 4Å: Chain B: H.85, S.111, L.112, T.113, R.118, G.169, S.170, T.171, Y.211, D.212 15 PLIP interactions: 14 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: B:Y.211 Hydrogen bonds: B:S.111, B:T.113, B:T.113, B:T.113, B:S.170, B:T.171, B:T.171, B:D.212, E.2 Water bridges: B:T.131, B:G.169, B:G.169 Salt bridges: B:H.85, B:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Structural Basis of Functional Transitions in Mammalian NMDA Receptors. Cell (2020)

Release Date

2020-07-15

Peptides

Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A

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