SMTL ID : 6uzw.1

Crystal structure of GLUN1/GLUN2A ligand-binding domain in complex with glycine and UBP791

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.126, A:T.126, A:S.180, A:S.180, A:D.224 Salt bridges: A:R.131

1 x QM4: (2S,3R)-1-[7-(2-carboxyethyl)phenanthrene-2-carbonyl]piperazine-2,3-dicarboxylic acid(Non-covalent)

QM4.2: 15 residues within 4Å: Chain B: E.12, A.13, H.84, S.110, L.111, T.112, R.117, S.169, V.193, Y.210, D.211, V.214, Y.217, K.218, Y.241 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:E.12, B:V.193, B:Y.210, B:V.214 Hydrogen bonds: B:S.110, B:S.110, B:T.112, B:T.112, B:T.112, B:S.169, B:S.169 Water bridges: B:H.84, B:T.170, B:Y.210 Salt bridges: B:H.84, B:R.117, B:K.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J.X. et al., Structural basis of subtype-selective competitive antagonism for GluN2C/2D-containing NMDA receptors. Nat Commun (2020)

Release Date

2020-01-29

Peptides

Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A

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