SMTL ID : 6ovd.1

Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 3-ethylphenyl-ACEPC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 10 residues within 4Å: Chain A: F.92, P.124, L.125, T.126, R.131, S.179, S.180, W.223, D.224, F.250 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:P.124, A:T.126, A:S.180, A:S.180, A:D.224, G.1 Salt bridges: A:R.131

1 x N9A: (3S,5S)-5-[(2R)-2-amino-2-carboxyethyl]-1-(3-ethylphenyl)pyrazolidine-3-carboxylic acid(Non-covalent)

N9A.2: 17 residues within 4Å: Chain B: H.85, S.111, L.112, T.113, R.118, T.131, G.132, I.133, G.169, S.170, T.171, N.174, Y.211, D.212, A.238, T.240, Y.242 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:T.113, B:T.131, B:I.133, B:A.238, B:T.240 Hydrogen bonds: B:T.113, B:T.113, B:S.170, B:S.170, B:T.171, B:T.171, B:Y.211, B:D.212 Water bridges: B:G.169, B:S.170 Salt bridges: B:H.85, B:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Syrenne, J.T. et al., Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 3-ethylphenyl-ACEPC. To Be Published

Release Date

2020-05-13

Peptides

Glutamate receptor ionotropic, NMDA 1: A
Glutamate receptor ionotropic, NMDA 2A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A

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