SMTL ID : 4kd1.1

CDK2 in complex with Dinaciclib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.88, M.91, D.92, E.195, R.199, A.201 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.88, A:M.91, A:E.195, A:E.195, A:A.201

1 x 1QK: 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium(Non-covalent)

1QK.2: 18 residues within 4Å: Chain A: I.10, G.11, E.12, V.18, A.31, K.33, V.64, F.80, E.81, F.82, L.83, H.84, Q.85, D.86, K.89, Q.131, L.134, A.144 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.10, A:V.18, A:A.31, A:V.64, A:F.80, A:F.80, A:F.82, A:Q.131, A:L.134, A:A.144 Hydrogen bonds: A:K.33, A:L.83, A:L.83, A:K.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, M.P. et al., Cyclin-dependent kinase inhibitor dinaciclib interacts with the acetyl-lysine recognition site of bromodomains. Acs Chem.Biol. (2013)

Release Date

2013-09-18

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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