SMTL ID : 4xnu.1

X-ray structure of Drosophila dopamine transporter in complex with nisoxetine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: A.20, V.21, D.22, N.25, S.253, N.285 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.22, A:N.25, A:N.25 NA.2: 6 residues within 4Å: Chain A: G.18, V.21, D.22, L.350, D.353, S.354 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.18, A:S.354

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: Y.45, Q.249, S.253, S.289 Ligand excluded by PLIP

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.4: 7 residues within 4Å: Chain A: V.10, L.13, L.203, Y.206, L.210, I.284, I.291 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.13, A:L.203, A:Y.206, A:L.210, A:L.210, A:I.284, A:I.284

1 x 41U: nisoxetine(Non-covalent)

41U.5: 15 residues within 4Å: Chain A: F.19, A.20, D.22, A.93, V.96, D.97, Y.99, Y.100, F.252, S.253, L.254, G.255, F.258, S.354, G.358 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.96, A:Y.100, A:Y.100, A:F.258 Hydrogen bonds: A:F.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Penmatsa, A. et al., X-ray structures of Drosophila dopamine transporter in complex with nisoxetine and reboxetine. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-05-13

Peptides

Integral membrane protein-dopamine transporter: A
antibody fragment light chain: B
antibody fragment heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Integral membrane protein-dopamine transporter

antibody fragment light chain

antibody fragment heavy chain

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