SMTL ID : 4xnx.1

X-ray structure of Drosophila dopamine transporter in complex with reboxetine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GLC.1: 7 residues within 4Å: Chain A: R.109, F.112, A.113, T.116, P.120, Y.154, D.173 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.116, A:R.109, A:R.109, A:F.112

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 5 residues within 4Å: Chain A: L.13, L.205, Y.208, L.212, I.286 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.13, A:L.205, A:Y.208, A:L.212, A:I.286, A:I.286 CLR.3: 6 residues within 4Å: Chain A: L.49, A.50, Y.277, F.285, Y.453, W.454 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.49, A:A.50, A:F.285, A:Y.453, A:W.454, A:W.454

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: A.20, D.22, N.25, S.255, N.287 Ligands: 41X.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.22, A:D.22, A:N.25, A:N.287 NA.5: 5 residues within 4Å: Chain A: G.18, V.21, L.352, D.355, S.356 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.18, A:D.355, A:S.356

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: F.29, Y.45, Q.251, S.255, S.291 Ligand excluded by PLIP

1 x 41X: (2R)-2-[(R)-(2-ethoxyphenoxy)(phenyl)methyl]morpholine(Non-covalent)

41X.7: 16 residues within 4Å: Chain A: F.19, A.20, D.22, A.93, V.96, D.97, Y.99, Y.100, F.254, S.255, G.257, F.260, V.262, S.356, G.360 Ligands: NA.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.93, A:V.96, A:Y.100, A:Y.100, A:Y.100, A:F.260 Hydrogen bonds: A:F.19, A:S.356 pi-Stacking: A:Y.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Penmatsa, A. et al., X-ray structures of Drosophila dopamine transporter in complex with nisoxetine and reboxetine. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-05-13

Peptides

Transporter: A
antibody fragment light chain: B
Antibody fragment heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Transporter

antibody fragment light chain

Antibody fragment heavy chain

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