- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.06 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.2: 6 residues within 4Å:- Chain A: I.89, Y.92, N.93, I.95, H.96, E.137
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.93, A:I.95, A:H.96
NA.6: 6 residues within 4Å:- Chain B: I.89, Y.92, N.93, I.95, H.96, E.137
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.92, B:I.95, B:H.96
NA.10: 6 residues within 4Å:- Chain C: I.89, Y.92, N.93, I.95, H.96, E.137
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:I.95, C:I.95, C:H.96
NA.14: 6 residues within 4Å:- Chain D: I.89, Y.92, N.93, I.95, H.96, E.137
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:I.95, D:H.96, D:E.137
- 4 x 8HX: 8-hydroxy-3,9-dihydro-1H-purine-2,6-dione(Non-covalent)
8HX.3: 15 residues within 4Å:- Chain A: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, I.289
- Chain B: Y.9, K.11, I.55, A.57, T.58, D.59
- Ligands: CL.1
10 PLIP interactions:2 interactions with chain B, 8 interactions with chain A- Hydrogen bonds: B:T.58, B:D.59, A:R.177, A:R.177, A:V.228, A:Q.229, A:Q.229, A:N.255
- pi-Stacking: A:F.160, A:F.160
8HX.7: 15 residues within 4Å:- Chain A: Y.9, K.11, I.55, A.57, T.58, D.59
- Chain B: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, I.289
- Ligands: CL.5
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.177, B:R.177, B:V.228, B:Q.229, B:Q.229, B:N.255, A:T.58, A:D.59
- pi-Stacking: B:F.160, B:F.160
8HX.11: 15 residues within 4Å:- Chain C: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, I.289
- Chain D: Y.9, K.11, I.55, A.57, T.58, D.59
- Ligands: CL.9
10 PLIP interactions:8 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:R.177, C:R.177, C:V.228, C:Q.229, C:Q.229, C:N.255, D:T.58, D:D.59
- pi-Stacking: C:F.160, C:F.160
8HX.15: 15 residues within 4Å:- Chain C: Y.9, K.11, I.55, A.57, T.58, D.59
- Chain D: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, I.289
- Ligands: CL.13
10 PLIP interactions:2 interactions with chain C, 8 interactions with chain D- Hydrogen bonds: C:T.58, C:D.59, D:R.177, D:R.177, D:V.228, D:Q.229, D:Q.229, D:N.255
- pi-Stacking: D:F.160, D:F.160
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 9 residues within 4Å:- Chain A: S.283, D.284, P.285
- Chain B: R.15
- Chain C: P.281, Q.282, S.283, D.284
- Ligands: GOL.12
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:S.283, C:S.283, C:D.284, C:D.284
- Water bridges: C:Q.282, C:Q.282, C:Q.282, C:Q.282
GOL.8: 9 residues within 4Å:- Chain A: R.15
- Chain B: S.283, D.284, P.285
- Chain D: P.281, Q.282, S.283, D.284
- Ligands: GOL.16
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:S.283, D:S.283, D:D.284, D:D.284
- Water bridges: D:Q.282, D:Q.282, D:Q.282, D:Q.282
GOL.12: 9 residues within 4Å:- Chain A: P.281, Q.282, S.283, D.284
- Chain C: S.283, D.284, P.285
- Chain D: R.15
- Ligands: GOL.4
9 PLIP interactions:1 interactions with chain C, 8 interactions with chain A- Hydrogen bonds: C:D.284, A:S.283, A:S.283, A:D.284, A:D.284
- Water bridges: A:Q.282, A:Q.282, A:Q.282, A:Q.282
GOL.16: 9 residues within 4Å:- Chain B: P.281, Q.282, S.283, D.284
- Chain C: R.15
- Chain D: S.283, D.284, P.285
- Ligands: GOL.8
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:S.283, B:S.283, B:D.284, B:D.284, D:D.284
- Water bridges: B:Q.282, B:Q.282, B:Q.282, B:Q.282
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oksanen, E. et al., The neutron structure of urate oxidase resolves a long-standing mechanistic conundrum and reveals unexpected changes in protonation. Plos One (2014)
- Release Date
- 2014-02-05
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.06 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x 8HX: 8-hydroxy-3,9-dihydro-1H-purine-2,6-dione(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oksanen, E. et al., The neutron structure of urate oxidase resolves a long-standing mechanistic conundrum and reveals unexpected changes in protonation. Plos One (2014)
- Release Date
- 2014-02-05
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A