- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
AZA.2: 12 residues within 4Å:- Chain A: F.160, L.171, R.177, S.227, V.228, Q.229, N.255
- Chain B: Y.9, I.55, A.57, T.58, D.59
13 PLIP interactions:9 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:R.177, A:R.177, A:V.228, A:Q.229, A:Q.229, A:N.255, B:T.58, B:D.59
- Water bridges: A:H.257, B:T.58, B:T.58
- pi-Stacking: A:F.160, A:F.160
AZA.10: 12 residues within 4Å:- Chain A: Y.9, I.55, A.57, T.58, D.59
- Chain B: F.160, L.171, R.177, S.227, V.228, Q.229, N.255
13 PLIP interactions:9 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:R.177, B:R.177, B:V.228, B:Q.229, B:Q.229, B:N.255, A:T.58, A:D.59
- Water bridges: B:H.257, A:T.58, A:T.58
- pi-Stacking: B:F.160, B:F.160
AZA.18: 12 residues within 4Å:- Chain C: F.160, L.171, R.177, S.227, V.228, Q.229, N.255
- Chain D: Y.9, I.55, A.57, T.58, D.59
11 PLIP interactions:9 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:R.177, C:R.177, C:V.228, C:Q.229, C:Q.229, C:N.255, D:T.58, D:D.59
- Water bridges: C:H.257
- pi-Stacking: C:F.160, C:F.160
AZA.26: 12 residues within 4Å:- Chain C: Y.9, I.55, A.57, T.58, D.59
- Chain D: F.160, L.171, R.177, S.227, V.228, Q.229, N.255
11 PLIP interactions:9 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:R.177, D:R.177, D:V.228, D:Q.229, D:Q.229, D:N.255, C:T.58, C:D.59
- Water bridges: D:H.257
- pi-Stacking: D:F.160, D:F.160
- 12 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 3 residues within 4Å:- Chain A: R.15, E.32, H.105
6 PLIP interactions:6 interactions with chain A- Water bridges: A:R.15, A:R.15, A:R.15, A:R.123
- Salt bridges: A:R.15, A:H.105
ACT.4: 5 residues within 4Å:- Chain A: H.87, K.91
- Chain B: E.167, Y.168
- Chain D: K.267
6 PLIP interactions:3 interactions with chain B, 1 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: B:Y.168, A:K.91
- Hydrogen bonds: B:Y.168, B:Y.168
- Salt bridges: D:K.267, A:K.91
ACT.5: 2 residues within 4Å:- Chain A: S.53, H.94
No protein-ligand interaction detected (PLIP)ACT.11: 3 residues within 4Å:- Chain B: R.15, E.32, H.105
6 PLIP interactions:6 interactions with chain B- Water bridges: B:R.15, B:R.15, B:R.15, B:R.123
- Salt bridges: B:R.15, B:H.105
ACT.12: 5 residues within 4Å:- Chain A: E.167, Y.168
- Chain B: H.87, K.91
- Chain C: K.267
6 PLIP interactions:1 interactions with chain C, 2 interactions with chain B, 3 interactions with chain A- Salt bridges: C:K.267, B:K.91
- Hydrophobic interactions: B:K.91, A:Y.168
- Hydrogen bonds: A:Y.168, A:Y.168
ACT.13: 2 residues within 4Å:- Chain B: S.53, H.94
No protein-ligand interaction detected (PLIP)ACT.19: 3 residues within 4Å:- Chain C: R.15, E.32, H.105
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:E.32
- Water bridges: C:R.15, C:R.15, C:R.15, C:R.123
- Salt bridges: C:R.15, C:H.105
ACT.20: 5 residues within 4Å:- Chain B: K.267
- Chain C: H.87, K.91
- Chain D: E.167, Y.168
6 PLIP interactions:3 interactions with chain D, 1 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: D:Y.168, C:K.91
- Hydrogen bonds: D:E.167, D:Y.168
- Salt bridges: B:K.267, C:K.91
ACT.21: 2 residues within 4Å:- Chain C: S.53, H.94
No protein-ligand interaction detected (PLIP)ACT.27: 3 residues within 4Å:- Chain D: R.15, E.32, H.105
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:E.32
- Water bridges: D:R.15, D:R.15, D:R.15, D:R.123
- Salt bridges: D:R.15, D:H.105
ACT.28: 5 residues within 4Å:- Chain A: K.267
- Chain C: E.167, Y.168
- Chain D: H.87, K.91
6 PLIP interactions:3 interactions with chain C, 1 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: C:Y.168, D:K.91
- Hydrogen bonds: C:E.167, C:Y.168
- Salt bridges: A:K.267, D:K.91
ACT.29: 2 residues within 4Å:- Chain D: S.53, H.94
No protein-ligand interaction detected (PLIP)- 8 x KR: KRYPTON(Non-covalent)
KR.6: 2 residues within 4Å:- Chain A: T.231, L.253
No protein-ligand interaction detected (PLIP)KR.7: 6 residues within 4Å:- Chain A: V.16, Y.17, K.18, Y.31, M.33, V.74
No protein-ligand interaction detected (PLIP)KR.14: 2 residues within 4Å:- Chain B: T.231, L.253
No protein-ligand interaction detected (PLIP)KR.15: 6 residues within 4Å:- Chain B: V.16, Y.17, K.18, Y.31, M.33, V.74
No protein-ligand interaction detected (PLIP)KR.22: 2 residues within 4Å:- Chain C: T.231, L.253
No protein-ligand interaction detected (PLIP)KR.23: 6 residues within 4Å:- Chain C: V.16, Y.17, K.18, Y.31, M.33, V.74
No protein-ligand interaction detected (PLIP)KR.30: 2 residues within 4Å:- Chain D: T.231, L.253
No protein-ligand interaction detected (PLIP)KR.31: 6 residues within 4Å:- Chain D: V.16, Y.17, K.18, Y.31, M.33, V.74
No protein-ligand interaction detected (PLIP)- 4 x NA: SODIUM ION(Non-functional Binders)
NA.8: 6 residues within 4Å:- Chain A: I.89, Y.92, N.93, I.95, H.96, E.137
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.95, A:E.137
NA.16: 6 residues within 4Å:- Chain B: I.89, Y.92, N.93, I.95, H.96, E.137
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.95, B:H.96
NA.24: 6 residues within 4Å:- Chain C: I.89, Y.92, N.93, I.95, H.96, E.137
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:I.89, C:I.95, C:H.96
NA.32: 6 residues within 4Å:- Chain D: I.89, Y.92, N.93, I.95, H.96, E.137
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:I.95, D:H.96, D:E.137
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prange, T. et al., Comparative study of the effects of high hydrostatic pressure per se and high argon pressure on urate oxidase ligand stabilization. Acta Cryst. D (2022)
- Release Date
- 2019-12-18
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 8 x KR: KRYPTON(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prange, T. et al., Comparative study of the effects of high hydrostatic pressure per se and high argon pressure on urate oxidase ligand stabilization. Acta Cryst. D (2022)
- Release Date
- 2019-12-18
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A