SMTL ID : 4puv.1

URATE OXIDASE DI-AZIDE complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-tetramer

Ligands

12 x AZI: AZIDE ION(Non-covalent)

AZI.1: 8 residues within 4Å: Chain A: F.160, Q.229, I.289 Chain B: Y.9, I.55, A.57, T.58 Ligands: AZI.2 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.58, B:T.58, B:T.58, A:Q.229 Water bridges: B:D.59, A:N.255, A:N.255 AZI.2: 9 residues within 4Å: Chain A: R.177, V.228, N.255, H.257, G.287, I.289 Chain B: K.11, T.58 Ligands: AZI.1 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:T.58, A:N.255 Water bridges: B:T.58, B:T.58, A:R.177, A:R.177, A:R.177, A:R.177 AZI.3: 5 residues within 4Å: Chain A: K.290 Chain B: A.6, A.7, R.8, E.40 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:K.290, B:A.7, B:A.7, B:R.8, B:R.8, B:R.8 AZI.5: 8 residues within 4Å: Chain A: Y.9, I.55, A.57, T.58 Chain B: F.160, Q.229, I.289 Ligands: AZI.6 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:T.58, A:T.58, B:Q.229, B:Q.229 Water bridges: A:T.58, A:D.59, B:N.255, B:N.255 AZI.6: 9 residues within 4Å: Chain A: K.11, T.58 Chain B: R.177, V.228, N.255, H.257, G.287, I.289 Ligands: AZI.5 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.255, A:T.58 Water bridges: B:R.177, B:R.177, B:R.177, B:R.177, A:T.58, A:T.58 AZI.7: 5 residues within 4Å: Chain A: A.6, A.7, R.8, E.40 Chain B: K.290 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.7, A:R.8, A:R.8, A:R.8, B:K.290 AZI.9: 8 residues within 4Å: Chain C: F.160, Q.229, I.289 Chain D: Y.9, I.55, A.57, T.58 Ligands: AZI.10 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:Q.229, D:T.58, D:T.58, D:T.58 Water bridges: C:N.255, C:N.255, D:D.59 AZI.10: 9 residues within 4Å: Chain C: R.177, V.228, N.255, H.257, G.287, I.289 Chain D: K.11, T.58 Ligands: AZI.9 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:N.255, D:T.58 Water bridges: C:R.177, C:R.177, C:R.177, C:Q.229, D:T.58 AZI.11: 5 residues within 4Å: Chain C: K.290 Chain D: A.6, A.7, R.8, E.40 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:A.7, D:A.7, D:R.8, D:R.8, D:R.8 AZI.13: 8 residues within 4Å: Chain C: Y.9, I.55, A.57, T.58 Chain D: F.160, Q.229, I.289 Ligands: AZI.14 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:T.58, C:T.58, D:Q.229 Water bridges: C:D.59, D:N.255, D:N.255 AZI.14: 9 residues within 4Å: Chain C: K.11, T.58 Chain D: R.177, V.228, N.255, H.257, G.287, I.289 Ligands: AZI.13 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:N.255, C:T.58, C:T.58 Water bridges: D:R.177, D:R.177, D:R.177, D:R.177, C:T.58 AZI.15: 5 residues within 4Å: Chain C: A.6, A.7, R.8, E.40 Chain D: K.290 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:A.7, C:R.8, C:R.8, C:R.8, D:K.290

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: I.89, Y.92, N.93, I.95, H.96, E.137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.95, A:E.137 Water bridges: A:N.93 NA.8: 6 residues within 4Å: Chain B: I.89, Y.92, N.93, I.95, H.96, E.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.89, B:I.95 Water bridges: B:N.93 NA.12: 6 residues within 4Å: Chain C: I.89, Y.92, N.93, I.95, H.96, E.137 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.89, C:I.95 Water bridges: C:N.93 NA.16: 6 residues within 4Å: Chain D: I.89, Y.92, N.93, I.95, H.96, E.137 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.93, D:I.95 Water bridges: D:N.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabison, L. et al., Azide inhibition of urate oxidase. Acta Crystallogr.,Sect.F (2014)

Release Date

2014-12-24

Peptides

Uricase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Uricase

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