SMTL ID : 6i9x.1

urate oxidase under 35 bar of argon

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

4 x AZA: 8-AZAXANTHINE(Non-covalent)

AZA.1: 12 residues within 4Å: Chain A: F.160, L.171, R.177, S.227, V.228, Q.229, N.255 Chain B: Y.9, I.55, A.57, T.58, D.59 12 PLIP interactions: 4 interactions with chain B, 8 interactions with chain A Hydrogen bonds: B:T.58, B:D.59, A:R.177, A:R.177, A:V.228, A:Q.229, A:Q.229, A:N.255 Water bridges: B:T.58, B:T.58 pi-Stacking: A:F.160, A:F.160 AZA.4: 12 residues within 4Å: Chain A: Y.9, I.55, A.57, T.58, D.59 Chain B: F.160, L.171, R.177, S.227, V.228, Q.229, N.255 12 PLIP interactions: 4 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:T.58, A:D.59, B:R.177, B:R.177, B:V.228, B:Q.229, B:Q.229, B:N.255 Water bridges: A:T.58, A:T.58 pi-Stacking: B:F.160, B:F.160 AZA.7: 12 residues within 4Å: Chain C: F.160, L.171, R.177, S.227, V.228, Q.229, N.255 Chain D: Y.9, I.55, A.57, T.58, D.59 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.177, C:R.177, C:V.228, C:Q.229, C:Q.229, C:N.255, D:T.58, D:D.59 pi-Stacking: C:F.160, C:F.160 AZA.10: 12 residues within 4Å: Chain C: Y.9, I.55, A.57, T.58, D.59 Chain D: F.160, L.171, R.177, S.227, V.228, Q.229, N.255 10 PLIP interactions: 2 interactions with chain C, 8 interactions with chain D Hydrogen bonds: C:T.58, C:D.59, D:R.177, D:R.177, D:V.228, D:Q.229, D:Q.229, D:N.255 pi-Stacking: D:F.160, D:F.160

4 x AR: ARGON(Non-covalent)

AR.2: 3 residues within 4Å: Chain A: F.220, T.231, L.253 No protein-ligand interaction detected (PLIP) AR.5: 3 residues within 4Å: Chain B: F.220, T.231, L.253 No protein-ligand interaction detected (PLIP) AR.8: 3 residues within 4Å: Chain C: F.220, T.231, L.253 No protein-ligand interaction detected (PLIP) AR.11: 3 residues within 4Å: Chain D: F.220, T.231, L.253 No protein-ligand interaction detected (PLIP)

4 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: I.89, Y.92, N.93, I.95, E.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.93, A:H.96 NA.6: 5 residues within 4Å: Chain B: I.89, Y.92, N.93, I.95, E.137 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.96, B:E.137 NA.9: 5 residues within 4Å: Chain C: I.89, Y.92, N.93, I.95, E.137 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.95 NA.12: 5 residues within 4Å: Chain D: I.89, Y.92, N.93, I.95, E.137 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prange, T. et al., Comparative study of the effects of high hydrostatic pressure per se and high argon pressure on urate oxidase ligand stabilization. Acta Cryst. D (2022)

Release Date

2019-12-18

Peptides

Uricase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Uricase

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