- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x AZA: 8-AZAXANTHINE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.4: 6 residues within 4Å:- Chain A: I.89, Y.92, N.93, I.95, H.96, E.137
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.95, A:H.96
NA.12: 6 residues within 4Å:- Chain B: I.89, Y.92, N.93, I.95, H.96, E.137
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.93, B:I.95
NA.20: 6 residues within 4Å:- Chain C: I.89, Y.92, N.93, I.95, H.96, E.137
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:I.95, C:E.137
NA.28: 6 residues within 4Å:- Chain D: I.89, Y.92, N.93, I.95, H.96, E.137
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.95, D:I.95
- 8 x ZN: ZINC ION(Non-covalent)
ZN.5: 6 residues within 4Å:- Chain A: C.36, L.38, N.101
- Ligands: AZA.2, AZA.3, ZN.6
2 PLIP interactions:2 Ligand-Water interactions- Metal complexes: H2O.21, H2O.21
ZN.6: 6 residues within 4Å:- Chain A: D.12, C.36
- Chain B: L.288
- Ligands: AZA.2, AZA.3, ZN.5
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.12, A:D.12, A:C.36
ZN.13: 6 residues within 4Å:- Chain B: C.36, L.38, N.101
- Ligands: AZA.10, AZA.11, ZN.14
2 PLIP interactions:2 Ligand-Water interactions- Metal complexes: H2O.41, H2O.41
ZN.14: 6 residues within 4Å:- Chain A: L.288
- Chain B: D.12, C.36
- Ligands: AZA.10, AZA.11, ZN.13
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.12, B:D.12, B:C.36
ZN.21: 6 residues within 4Å:- Chain C: C.36, L.38, N.101
- Ligands: AZA.18, AZA.19, ZN.22
2 PLIP interactions:2 Ligand-Water interactions- Metal complexes: H2O.62, H2O.62
ZN.22: 6 residues within 4Å:- Chain C: D.12, C.36
- Chain D: L.288
- Ligands: AZA.18, AZA.19, ZN.21
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:D.12, C:D.12, C:C.36
ZN.29: 6 residues within 4Å:- Chain D: C.36, L.38, N.101
- Ligands: AZA.26, AZA.27, ZN.30
2 PLIP interactions:2 Ligand-Water interactions- Metal complexes: H2O.82, H2O.82
ZN.30: 6 residues within 4Å:- Chain C: L.288
- Chain D: D.12, C.36
- Ligands: AZA.26, AZA.27, ZN.29
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.12, D:D.12, D:C.36
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 9 residues within 4Å:- Chain A: S.283, D.284, P.285
- Chain B: R.15
- Chain C: P.281, Q.282, S.283, D.284
- Ligands: GOL.23
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:S.283, C:D.284, C:D.284, A:D.284
- Water bridges: C:Q.282, C:Q.282, C:Q.282, C:Q.282
GOL.15: 9 residues within 4Å:- Chain A: R.15
- Chain B: S.283, D.284, P.285
- Chain D: P.281, Q.282, S.283, D.284
- Ligands: GOL.31
8 PLIP interactions:7 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:S.283, D:D.284, D:D.284, B:D.284
- Water bridges: D:Q.282, D:Q.282, D:Q.282, D:Q.282
GOL.23: 9 residues within 4Å:- Chain A: P.281, Q.282, S.283, D.284
- Chain C: S.283, D.284, P.285
- Chain D: R.15
- Ligands: GOL.7
9 PLIP interactions:2 interactions with chain C, 7 interactions with chain A- Hydrogen bonds: C:D.284, C:D.284, A:S.283, A:D.284, A:D.284
- Water bridges: A:Q.282, A:Q.282, A:Q.282, A:Q.282
GOL.31: 9 residues within 4Å:- Chain B: P.281, Q.282, S.283, D.284
- Chain C: R.15
- Chain D: S.283, D.284, P.285
- Ligands: GOL.15
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:S.283, B:D.284, B:D.284, D:D.284, D:D.284
- Water bridges: B:Q.282, B:Q.282, B:Q.282, B:Q.282
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 7 residues within 4Å:- Chain A: N.255, H.257, G.287, I.289
- Chain B: K.11, T.58
- Ligands: AZA.1
Ligand excluded by PLIPCL.16: 7 residues within 4Å:- Chain A: K.11, T.58
- Chain B: N.255, H.257, G.287, I.289
- Ligands: AZA.9
Ligand excluded by PLIPCL.24: 7 residues within 4Å:- Chain C: N.255, H.257, G.287, I.289
- Chain D: K.11, T.58
- Ligands: AZA.17
Ligand excluded by PLIPCL.32: 7 residues within 4Å:- Chain C: K.11, T.58
- Chain D: N.255, H.257, G.287, I.289
- Ligands: AZA.25
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oksanen, E. et al., The neutron structure of urate oxidase resolves a long-standing mechanistic conundrum and reveals unexpected changes in protonation. Plos One (2014)
- Release Date
- 2014-02-05
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x AZA: 8-AZAXANTHINE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oksanen, E. et al., The neutron structure of urate oxidase resolves a long-standing mechanistic conundrum and reveals unexpected changes in protonation. Plos One (2014)
- Release Date
- 2014-02-05
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A