SMTL ID : 4oyq.1

(6-isothiocyanatohexyl)benzene inhibitor complexed with Macrophage Migration Inhibitory Factor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

3 x 1X2: 6-isothiocyanatohexylbenzene(Covalent)

1X2.1: 9 residues within 4Å: Chain A: P.1, M.2, Y.36, H.62, S.63, I.64, F.113 Chain B: Y.95 Ligands: GOL.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.36, A:Y.36, A:I.64, A:F.113, A:F.113 Hydrogen bonds: A:P.1 Water bridges: A:I.64 1X2.4: 10 residues within 4Å: Chain B: P.1, M.2, K.32, P.33, Y.36, H.62, S.63, I.64, F.113 Chain C: Y.95 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:K.32, B:P.33, B:Y.36, B:I.64, B:F.113, B:F.113 Hydrogen bonds: B:P.1 Water bridges: B:I.64 1X2.8: 8 residues within 4Å: Chain A: Y.95 Chain C: P.1, M.2, Y.36, H.62, S.63, I.64, F.113 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.36, C:Y.36, C:I.64, C:F.113, C:F.113 Water bridges: C:I.64

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.5: 2 residues within 4Å: Chain B: A.70, R.73 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.73 SO4.6: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.69, B:A.70, B:Q.71, B:Q.71 SO4.9: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.68, C:G.69, C:A.70, C:Q.71, C:Q.71

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: G.65, K.66 Ligands: 1X2.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.66 GOL.7: 5 residues within 4Å: Chain A: L.19, S.20 Chain B: G.51, S.52, S.53 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.53, B:S.53, B:S.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spencer, E.S. et al., To be published. To be published

Release Date

2014-03-05

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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