SMTL ID : 4xpf.1

X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) bound to RTI-55

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.27 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x DMU: DECYL-BETA-D-MALTOPYRANOSIDE(Non-covalent)

DMU.1: 4 residues within 4Å: Chain A: R.114, F.117, Y.157, D.176 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.117, A:F.117, A:D.176 Hydrogen bonds: A:R.114, A:F.117, A:Y.157 Salt bridges: A:R.114

1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)

P4G.2: 7 residues within 4Å: Chain A: R.33, F.257, E.322, D.413, G.418, Y.419, G.476 No protein-ligand interaction detected (PLIP)

1 x 42F: methyl (1R,2S,3S,5S)-3-(4-iodophenyl)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate(Non-covalent)

42F.3: 12 residues within 4Å: Chain A: F.24, D.27, V.101, G.102, Y.104, Y.105, N.106, F.257, F.263, S.359, S.360, G.363 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.24, A:Y.105, A:Y.105, A:F.263, A:F.263, A:F.263 Salt bridges: A:D.27

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.4: 4 residues within 4Å: Chain A: A.55, F.288, Y.456, W.457 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.288, A:F.288, A:W.457 CLR.5: 6 residues within 4Å: Chain A: V.15, L.18, L.208, Y.211, L.215, I.289 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.15, A:L.18, A:L.208, A:Y.211, A:I.289

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: A.25, D.27, N.30, S.258, N.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.30, A:S.258 NA.7: 5 residues within 4Å: Chain A: G.23, V.26, L.355, D.358, S.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.23, A:S.359

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 5 residues within 4Å: Chain A: N.30, Y.50, Q.254, S.258, S.294 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K.H. et al., Neurotransmitter and psychostimulant recognition by the dopamine transporter. Nature (2015)

Release Date

2015-05-06

Peptides

Dopamine transporter-protein: A
ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN: B
ANTIBODY FRAGMENT LIGHT CHAIN-PROTEIN, 9D5-LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Dopamine transporter-protein

ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN

ANTIBODY FRAGMENT LIGHT CHAIN-PROTEIN, 9D5-LIGHT CHAIN

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