SMTL ID : 5a7x.1

negative stain EM of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 17.00 Å

Oligo State

hetero-3-3-3-3-3-3-mer

Ligands

45 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.10, V.11, T.98 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain A: L.47, N.55 Ligand excluded by PLIP NAG.3: 5 residues within 4Å: Chain A: N.92, T.94, P.96, Q.181 Chain N: T.75 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: L.8, N.99 Ligand excluded by PLIP NAG.5: 6 residues within 4Å: Chain A: N.120, N.206, C.266, S.267, S.268 Ligands: NAG.13 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain A: N.134, T.136, N.137 Ligand excluded by PLIP NAG.7: 6 residues within 4Å: Chain A: E.126, E.127, I.128, N.147, Q.173, K.177 Ligand excluded by PLIP NAG.8: 5 residues within 4Å: Chain A: N.153, N.161, N.234, R.265, S.267 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain A: N.185 Ligand excluded by PLIP NAG.10: 4 residues within 4Å: Chain A: N.215, T.217, Q.218, P.238 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain A: T.221, N.223, K.227, L.228 Ligand excluded by PLIP NAG.12: 4 residues within 4Å: Chain A: K.164, N.229, G.232, R.233 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain A: V.151, S.267, N.269 Ligands: NAG.5 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain A: N.284 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain E: N.10, V.11, T.98 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain E: L.47, N.55 Ligand excluded by PLIP NAG.17: 5 residues within 4Å: Chain E: N.92, T.94, P.96, Q.181 Chain P: T.75 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain E: L.8, N.99 Ligand excluded by PLIP NAG.19: 6 residues within 4Å: Chain E: N.120, N.206, C.266, S.267, S.268 Ligands: NAG.27 Ligand excluded by PLIP NAG.20: 3 residues within 4Å: Chain E: N.134, T.136, N.137 Ligand excluded by PLIP NAG.21: 6 residues within 4Å: Chain E: E.126, E.127, I.128, N.147, Q.173, K.177 Ligand excluded by PLIP NAG.22: 5 residues within 4Å: Chain E: N.153, N.161, N.234, R.265, S.267 Ligand excluded by PLIP NAG.23: 1 residues within 4Å: Chain E: N.185 Ligand excluded by PLIP NAG.24: 4 residues within 4Å: Chain E: N.215, T.217, Q.218, P.238 Ligand excluded by PLIP NAG.25: 4 residues within 4Å: Chain E: T.221, N.223, K.227, L.228 Ligand excluded by PLIP NAG.26: 4 residues within 4Å: Chain E: K.164, N.229, G.232, R.233 Ligand excluded by PLIP NAG.27: 4 residues within 4Å: Chain E: V.151, S.267, N.269 Ligands: NAG.19 Ligand excluded by PLIP NAG.28: 1 residues within 4Å: Chain E: N.284 Ligand excluded by PLIP NAG.29: 3 residues within 4Å: Chain I: N.10, V.11, T.98 Ligand excluded by PLIP NAG.30: 2 residues within 4Å: Chain I: L.47, N.55 Ligand excluded by PLIP NAG.31: 5 residues within 4Å: Chain I: N.92, T.94, P.96, Q.181 Chain R: T.75 Ligand excluded by PLIP NAG.32: 2 residues within 4Å: Chain I: L.8, N.99 Ligand excluded by PLIP NAG.33: 6 residues within 4Å: Chain I: N.120, N.206, C.266, S.267, S.268 Ligands: NAG.41 Ligand excluded by PLIP NAG.34: 3 residues within 4Å: Chain I: N.134, T.136, N.137 Ligand excluded by PLIP NAG.35: 6 residues within 4Å: Chain I: E.126, E.127, I.128, N.147, Q.173, K.177 Ligand excluded by PLIP NAG.36: 5 residues within 4Å: Chain I: N.153, N.161, N.234, R.265, S.267 Ligand excluded by PLIP NAG.37: 1 residues within 4Å: Chain I: N.185 Ligand excluded by PLIP NAG.38: 4 residues within 4Å: Chain I: N.215, T.217, Q.218, P.238 Ligand excluded by PLIP NAG.39: 4 residues within 4Å: Chain I: T.221, N.223, K.227, L.228 Ligand excluded by PLIP NAG.40: 4 residues within 4Å: Chain I: K.164, N.229, G.232, R.233 Ligand excluded by PLIP NAG.41: 4 residues within 4Å: Chain I: V.151, S.267, N.269 Ligands: NAG.33 Ligand excluded by PLIP NAG.42: 1 residues within 4Å: Chain I: N.284 Ligand excluded by PLIP NAG.43: 1 residues within 4Å: Chain N: N.88 Ligand excluded by PLIP NAG.44: 1 residues within 4Å: Chain P: N.88 Ligand excluded by PLIP NAG.45: 1 residues within 4Å: Chain R: N.88 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scharf, L. et al., Broadly Neutralizing Antibody 8Anc195 Recognizes Closed and Open States of HIV-1 Env. Cell(Cambridge,Mass.) (2015)

Release Date

2015-08-05

Peptides

HIV-1 YU2 GP120: AEI
T-CELL SURFACE GLYCOPROTEIN CD4: BFJ
FAB OF BROADLY NEUTRALIZING ANTIBODY 17B: CGK
FAB OF BROADLY NEUTRALIZING ANTIBODY 17B: DHL
FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195: MOQ
FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195: NPR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

I
I

B
B

F
F

J
J

C
C

G
G

K
K

D
D

H
H

L
L

M
M

O
O

Q
Q

N
N

P
P

R
R

HIV-1 YU2 GP120

T-CELL SURFACE GLYCOPROTEIN CD4

FAB OF BROADLY NEUTRALIZING ANTIBODY 17B

FAB OF BROADLY NEUTRALIZING ANTIBODY 17B

FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195

FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195

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