SMTL ID : 9d98.1

Cryo-EM structure of HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-VRC34.01 Fab with two gp120 protomers rotated

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 4.19 Å
Oligo State
hetero-3-3-3-3-3-mer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Thakur, B. et al., Cryo-EM structure of HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-VRC34.01 Fab with one gp120 rotated. To Be Published
Release Date
2025-04-30
Peptides
Surface protein gp120: ABC
Transmembrane protein gp41: DEF
VRC34.01 Fab heavy chain: GIK
VRC34.01 Fab light chain: HJL
T-cell surface glycoprotein CD4: MNO
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
I
I
K
K
H
H
J
J
L
L
M
M
N
N
O
O

Surface protein gp120

Toggle Identical (AC)

Transmembrane protein gp41

Toggle Identical (DE)

VRC34.01 Fab heavy chain

Toggle Identical (GIK)

VRC34.01 Fab light chain

Toggle Identical (HJL)

T-cell surface glycoprotein CD4

Toggle Identical (MNO)

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