SMTL ID : 5a8h.1

cryo-ET subtomogram averaging of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 23.00 Å

Oligo State

hetero-3-3-3-3-3-3-mer

Ligands

45 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.10, V.11, T.98 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain A: L.47, N.55 Ligand excluded by PLIP NAG.3: 15 residues within 4Å: Chain A: N.92, T.94, P.96, Q.181 Chain F: V.27, T.29, F.30, G.31, L.32, Y.33, W.55, V.72, D.73, L.74, P.80 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: L.8, N.99 Ligand excluded by PLIP NAG.5: 6 residues within 4Å: Chain A: N.120, N.206, C.266, S.267, S.268 Ligands: NAG.13 Ligand excluded by PLIP NAG.6: 9 residues within 4Å: Chain A: N.134, T.136, N.137 Chain F: Q.1, I.2, H.3, Y.25, G.26, V.27 Ligand excluded by PLIP NAG.7: 6 residues within 4Å: Chain A: E.126, E.127, I.128, N.147, Q.173, K.177 Ligand excluded by PLIP NAG.8: 5 residues within 4Å: Chain A: N.153, N.161, N.234, R.265, S.267 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain A: N.185 Ligand excluded by PLIP NAG.10: 4 residues within 4Å: Chain A: N.215, T.217, Q.218, P.238 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain A: T.221, N.223, K.227, L.228 Ligand excluded by PLIP NAG.12: 4 residues within 4Å: Chain A: K.164, N.229, G.232, R.233 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain A: V.151, S.267, N.269 Ligands: NAG.5 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain A: N.284 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain F: N.88 Ligand excluded by PLIP NAG.16: 5 residues within 4Å: Chain G: N.10, V.11, T.98 Chain L: W.53, R.54 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain G: L.47, N.55 Ligand excluded by PLIP NAG.18: 16 residues within 4Å: Chain G: N.92, T.94, P.96, Q.181 Chain L: K.23, A.24, Y.25, V.27, F.30, V.72, D.73, L.74, S.78, P.79, P.80, I.81 Ligand excluded by PLIP NAG.19: 2 residues within 4Å: Chain G: L.8, N.99 Ligand excluded by PLIP NAG.20: 6 residues within 4Å: Chain G: N.120, N.206, C.266, S.267, S.268 Ligands: NAG.28 Ligand excluded by PLIP NAG.21: 5 residues within 4Å: Chain G: N.134, T.136, N.137 Chain L: H.3, Y.25 Ligand excluded by PLIP NAG.22: 6 residues within 4Å: Chain G: E.126, E.127, I.128, N.147, Q.173, K.177 Ligand excluded by PLIP NAG.23: 5 residues within 4Å: Chain G: N.153, N.161, N.234, R.265, S.267 Ligand excluded by PLIP NAG.24: 1 residues within 4Å: Chain G: N.185 Ligand excluded by PLIP NAG.25: 4 residues within 4Å: Chain G: N.215, T.217, Q.218, P.238 Ligand excluded by PLIP NAG.26: 4 residues within 4Å: Chain G: T.221, N.223, K.227, L.228 Ligand excluded by PLIP NAG.27: 4 residues within 4Å: Chain G: K.164, N.229, G.232, R.233 Ligand excluded by PLIP NAG.28: 4 residues within 4Å: Chain G: V.151, S.267, N.269 Ligands: NAG.20 Ligand excluded by PLIP NAG.29: 1 residues within 4Å: Chain G: N.284 Ligand excluded by PLIP NAG.30: 1 residues within 4Å: Chain L: N.88 Ligand excluded by PLIP NAG.31: 8 residues within 4Å: Chain M: N.10, V.11, T.98 Chain Q: Y.95 Chain R: Q.51, W.53, K.56, S.58 Ligand excluded by PLIP NAG.32: 2 residues within 4Å: Chain M: L.47, N.55 Ligand excluded by PLIP NAG.33: 14 residues within 4Å: Chain M: N.92, T.94, P.96, Q.181 Chain R: S.21, C.22, K.23, S.70, A.71, L.74, P.80, I.81, S.82, S.83 Ligand excluded by PLIP NAG.34: 4 residues within 4Å: Chain M: L.8, N.99 Chain R: W.55, K.56 Ligand excluded by PLIP NAG.35: 6 residues within 4Å: Chain M: N.120, N.206, C.266, S.267, S.268 Ligands: NAG.43 Ligand excluded by PLIP NAG.36: 5 residues within 4Å: Chain M: N.134, T.136, N.137 Chain R: V.5, Y.25 Ligand excluded by PLIP NAG.37: 6 residues within 4Å: Chain M: E.126, E.127, I.128, N.147, Q.173, K.177 Ligand excluded by PLIP NAG.38: 5 residues within 4Å: Chain M: N.153, N.161, N.234, R.265, S.267 Ligand excluded by PLIP NAG.39: 1 residues within 4Å: Chain M: N.185 Ligand excluded by PLIP NAG.40: 4 residues within 4Å: Chain M: N.215, T.217, Q.218, P.238 Ligand excluded by PLIP NAG.41: 4 residues within 4Å: Chain M: T.221, N.223, K.227, L.228 Ligand excluded by PLIP NAG.42: 4 residues within 4Å: Chain M: K.164, N.229, G.232, R.233 Ligand excluded by PLIP NAG.43: 4 residues within 4Å: Chain M: V.151, S.267, N.269 Ligands: NAG.35 Ligand excluded by PLIP NAG.44: 1 residues within 4Å: Chain M: N.284 Ligand excluded by PLIP NAG.45: 1 residues within 4Å: Chain R: N.88 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scharf, L. et al., Broadly Neutralizing Antibody 8ANC195 Recognizes Closed and Open States of HIV-1 Env. Cell (2015)

Release Date

2015-08-05

Peptides

HIV-1 GP120: AGM
T-CELL SURFACE GLYCOPROTEIN CD4: BHN
FAB OF BROADLY NEUTRALIZING ANTIBODY 17B: CIO
FAB OF BROADLY NEUTRALIZING ANTIBODY 17B: DJP
FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5: EKQ
FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5: FLR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G
G

M
M

B
B

H
H

N
N

C
C

I
I

O
O

D
D

J
J

P
P

E
E

K
K

Q
Q

F
F

L
L

R
R

HIV-1 GP120

T-CELL SURFACE GLYCOPROTEIN CD4

FAB OF BROADLY NEUTRALIZING ANTIBODY 17B

FAB OF BROADLY NEUTRALIZING ANTIBODY 17B

FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5

FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5

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