SMTL ID : 9exm.1

Cryogenic APO structures of soluble epoxide hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: E.399, S.458, R.461 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.399 Water bridges: A:S.458, A:F.460, A:R.461 GOL.2: 2 residues within 4Å: Chain A: S.62, Q.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.62, A:Q.63 GOL.3: 7 residues within 4Å: Chain A: D.336, W.337, M.340, T.361, Y.384, Q.385, L.500 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.336, A:Y.384, A:Y.384, A:Q.385 Water bridges: A:Y.467

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: T.244, R.248, R.250, S.301 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.248, A:S.301 Water bridges: A:R.248, A:R.248

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: D.383, K.422, V.423, C.424, E.425 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.383, A:C.424, A:E.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunge, A. et al., Cryogenic APO structures of soluble Epoxide Hydrolase. To Be Published

Release Date

2025-05-21

Peptides

Bifunctional epoxide hydrolase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional epoxide hydrolase 2

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